Search   for 
Find Your Gene ·  Publications ·  Tools ·  Gene List Suite ·  Expression Atlases ·  About PLEXdb ·  Feedback
Login ID:
Password:
Plants
Arabidopsis
Barley
Brachypodium
Citrus
Cotton
Grape
Maize
Medicago
Poplar
Rice
Soybean
Sugarcane
Tomato
Wheat
Pathogens & Symbionts
Search Experiments
Download Data
Gene List Suite
Tools
Your Account
Documentation
News
Personnel
Links
 Data Release Policy 
PLEXdb is committed to making expression data publicly available to researchers world-wide...
complete policy
 

Browse AraPLEX Experiment Data

Choose an experiment:
Arabidopsis thaliana gene expression after 6 days in shoot induction medium
Rhonda DeCook, Iowa State University (rdecook@iastate.edu)
Experiment design (30 hybridizations)
genetic line
•line 4 •line 5 •line 13 •line 33 •line 35 •line 37 •line 115 •line 190 •line 191 •line 194 •line 217 •line 231 •line 232 •line 238 •line 242 •line 245 •line 263 •line 267 •line 283 •line 284 •line 288 •line 295 •line 302 •line 303 •line 332 •line 356 •line358 •line 367 •line 370 •line 377

Plant material for RNA extraction was collected 6 days after transferring Arabidopsis thaliana root segments to shoot induction medium. Root explan...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

Show
Experiment Name: Arabidopsis thaliana gene expression after 6 days in shoot induction medium
Accession No: AT10
Microarray: ATH1-121501
Visibility: public
Experiment Type:
Experiment Factor(s):
genetic line
•line 4  •line 5  •line 13  •line 33  •line 35  •line 37  •line 115  •line 190  •line 191  •line 194  •line 217  •line 231  •line 232  •line 238  •line 242  •line 245  •line 263  •line 267  •line 283  •line 284  •line 288  •line 295  •line 302  •line 303  •line 332  •line 356  •line358  •line 367  •line 370  •line 377
Quality Control:
Treatment summary:
 genetic line  # replicates
 line 4  1
 line 5  1
 line 13  1
 line 33  1
 line 35  1
 line 37  1
 line 115  1
 line 190  1
 line 191  1
 line 194  1
 line 217  1
 line 231  1
 line 232  1
 line 238  1
 line 242  1
 line 245  1
 line 263  1
 line 267  1
 line 283  1
 line 284  1
 line 288  1
 line 295  1
 line 302  1
 line 303  1
 line 332  1
 line 356  1
 line358  1
 line 367  1
 line 370  1
 line 377  1
Total hybridizations: 30
Description: Plant material for RNA extraction was collected 6 days after transferring Arabidopsis thaliana root segments to shoot induction medium. Root explants from several hundred seedlings for each of 30 recombinant inbred lines (RIL) were pooled for RNA extraction (resulting in one CEL file for each RIL). RNA extraction and hybridization to Affymetrix ATH1 oligonucleotide arrays were carried out as described in CHE et al. (2002) except, GeneChip Scanner 3000 was used for scanning the chips and the image data generated from the scans was converted to numerical data using GeneChip Operating System v 1.0.
Publication: 'Genetic Regulation of Gene Expression During Shoot Development in Arabidopsis', DeCook R, Lall S, Nettleton D and Howell SH
Genetics. 2006 Feb;172(2):1155-1164
pubmed: 15956669
Created: 2005-11-28 09:16:01
Last Update: 2008-08-05 10:39:54
Submitter: Rhonda DeCook
Name: Rhonda DeCook
Institution: Iowa State University
Head of Laboratory: Dan
email(s):
Homepage:

 
Copyright@2001-2013 The PLEXdb Group
All rights reserved.

For problems with the webpages contact PLEXdb webmasters