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Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
Ryan,Christopher,Kirkbride, ---- (rkirkbride@ucdavis.edu,bobg@ucla.edu)
Experiment design (17 hybridizations)
organism part name
•embryo proper •suspensor •micropylar endosperm •peripheral endosperm •chalazal endosperm •chalazal seed coat •general seed coat •whole seeds

This experiment has been imported by PLEXdb from NCBI GEO (GSE11262)

Series_summary:
Keywords: cell type comparison

Series_o...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
Accession No: AT101
Microarray: ATH1-121501
Visibility: public
Experiment Type:
Experiment Factor(s):
organism part name
•embryo proper   •suspensor   •micropylar endosperm   •peripheral endosperm   •chalazal endosperm   •chalazal seed coat   •general seed coat   •whole seeds
Quality Control: biological replicates
Treatment summary:
 organism part name  # replicates
 embryo proper  2
 suspensor  2
 micropylar endosperm  2
 peripheral endosperm  2
 chalazal endosperm  3
 chalazal seed coat  2
 general seed coat  2
 whole seeds  2
Total hybridizations: 17
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE11262)

Series_summary:
Keywords: cell type comparison

Series_overall_design:
Globular stage seed compartments were isolated using the LMD6000 system. Total RNA was amplified and hybridized with Affymetrix ATH1 Arabidopsis array for 17 samples (Embryo Proper, Micropylar Endosperm, Peripheral Endosperm, General Seed Coat, Chalazal Seed Coat, and Whole Seeds, 2 biological replicates each and Chalazal Endosperm with 3 biological replicates).


PLEXdb Curator's Note:
This sub-series is part of the super-series GSE12404 (Expression Data from Arabidopsis Seed Compartments at 5 Discrete Stages of Development); the sister series are GSE12402 (pre-globular stage), GSE12403 (linear-cotyledon stage), GSE15160 (Heart Stage), GSE15165 (mature green stage), and GSE20039 (bending cotyledon stage).
Publication: 'Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors', Le BH, Cheng C, Bui AQ, Wagmaister JA, Henry KF, Pelletier J, Kwong L, Belmonte M, Kirkbride R, Horvath S, Drews GN, Fischer RL, Okamuro JK, Harada JJ, Goldberg RB
Proc Natl Acad Sci U S A 2010 May 4;107(18):8063-70
pubmed: 20385809
Created: 2011-02-10 14:36:27
Last Update: 2011-02-14 14:13:08
Released: 2011-02-24
GEO Accession GSE11262
Submitter: PLEXdb Curator
Name: Ryan,Christopher,Kirkbride
Institution: ----
Head of Laboratory: Robert B. Goldberg
email(s):
Homepage:

 
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