Search   for 
Find Your Gene ·  Publications ·  Tools ·  Gene List Suite ·  Expression Atlases ·  About PLEXdb ·  Feedback
Login ID:
Password:
Plants
Arabidopsis
Barley
Brachypodium
Citrus
Cotton
Grape
Maize
Medicago
Poplar
Rice
Soybean
Sugarcane
Tomato
Wheat
Pathogens & Symbionts
Search Experiments
Download Data
Gene List Suite
Tools
Your Account
Documentation
News
Personnel
Links
 Data Release Policy 
PLEXdb is committed to making expression data publicly available to researchers world-wide...
complete policy
 

Browse AraPLEX Experiment Data

Choose an experiment:
Study of the effect of C2 on the transcriptome and the response to MeJA
Sandrine Balzergue, INRA, Department of URGV, Evry, France (balzerg@evry.inra.fr)
Experiment design (12 hybridizations)
genetic line
•transgenic C2 •control LUC
compound
•NaCl control •MeJA

This experiment has been imported by PLEXdb from NCBI GEO (GSE18667)

Series_summary:
affy_meja_arabidopsis - We want to determine if ...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

Show
Experiment Name: Study of the effect of C2 on the transcriptome and the response to MeJA
Accession No: AT111
Microarray: ATH1-121501
Visibility: public
Experiment Type:
Experiment Factor(s):
genetic line
•transgenic C2   •control LUC
compound
•NaCl control   •MeJA
Quality Control: biological replicates
Treatment summary:
 genetic line  compound  # replicates
 transgenic C2  NaCl control  3
 transgenic C2  MeJA  3
 control LUC  NaCl control  3
 control LUC  MeJA  3
Total hybridizations: 12
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE18667)

Series_summary:
affy_meja_arabidopsis - We want to determine if the presence of C2 modifies the cell transcriptome and its response to methyl jasmonate. Comparison of control lines and transgenic lines expressing C2 in basal conditions and after treatment with 50uM MeJA for 10 hours. C2 lines are expressing geminivirus C2 under a 35S promoter. PR1-LUC have a luciferase transgene under the control of the promoter of PR1; since the plants are not induced, these are the control plants (resistant to kanamycin, but not expressing anything else)
Keywords: gene knock in (transgenic),treated vs untreated comparison

Series_overall_design:
12 arrays - ATH1
Publication: none
Created: 2012-01-19 09:31:18
Last Update: 2012-01-19 10:22:37
Released: 2012-01-19
GEO Accession GSE18667
Submitter: PLEXdb Curator
Name: Sandrine Balzergue
Institution: INRA, Department of URGV, Evry, France
Head of Laboratory: Claire Lurin
email(s):
Homepage:

 
Copyright@2001-2013 The PLEXdb Group
All rights reserved.

For problems with the webpages contact PLEXdb webmasters