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Arabidopsis thaliana wild-type and pskr1-5 transcriptome upon the compatible interaction with Hyaloperonospora arabidopsidis
Harald Keller, INRA, Department of UMR-ISA, Sophia Antipolis, France (keller@sophia.inra.fr)
Experiment design (8 hybridizations)
genotype
•wild type •pskr1-5
pathogen inoculation
•water •Emwa1

This experiment has been imported by PLEXdb from NCBI GEO (GSE37255)

Series_summary:
We used Arabidopsis full-genome microarrays to c...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Arabidopsis thaliana wild-type and pskr1-5 transcriptome upon the compatible interaction with Hyaloperonospora arabidopsidis
Accession No: AT137
Microarray: ATH1-121501
Visibility: public
Experiment Type:
Experiment Factor(s):
genotype
•wild type   •pskr1-5
pathogen inoculation
•water   •Emwa1
Quality Control: biological replicates
Treatment summary:
 genotype  pathogen inoculation  # replicates
 wild type  water  2
 wild type  Emwa1  2
 pskr1-5  water  2
 pskr1-5  Emwa1  2
Total hybridizations: 8
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE37255)

Series_summary:
We used Arabidopsis full-genome microarrays to characterize plant transcript accumulations in wild-type plants and pskr1-5 mutants, 3 days after water treatment and inoculation with the biotrophic oomycete downy mildew pathogen, Hyaloperonospora arabidopsidis.

Series_overall_design:
In two independent experiments, cotyledons from the wild-type Wassilewskija (WS) ecotype and from the pskr1-5 mutant were treated with water, or inoculated with the H. arabidopsidis isolate Emwa1 to establish a compatible interaction. Affymetrix ATH1 microarrays were used to profile Arabidopsis transcript accumulations at 3 days after onset of treatment.
Publication: none
Created: 2012-05-23 11:31:27
Last Update: 2012-05-23 12:27:19
Released: 2012-05-30
GEO Accession GSE37255
Submitter: PLEXdb Curator
Name: Harald Keller
Institution: INRA, Department of UMR-ISA, Sophia Antipolis, France
Head of Laboratory: Harald Keller
email(s):
Homepage:

 
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