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Browse AraPLEX Experiment Data

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Auxin mediated gene expression in WT, arf7, arf19 and arf7 arf19 mutants
Yoko,,Okushima, Plant Gene Expression Center, U. C. Berkeley Department Plant and Microbial Biology Lab Athanasios Theologis Lab. (okushima@bs.naist.jp)
Experiment design (24 hybridizations)
genotype
•col_wt •nph4-1(arf7) •arf19-1 •nph4-1_and_arf19-1
compound
•Control •Auxin

This experiment has been imported by PLEXdb from NCBI GEO (GSE627)

Series_summary:
RNA samples were extracted from liquid cultured s...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Auxin mediated gene expression in WT, arf7, arf19 and arf7 arf19 mutants
Accession No: AT43
Microarray: ATH1-121501
Visibility: public
Experiment Type:
Experiment Factor(s):
genotype
•col_wt   •nph4-1(arf7)   •arf19-1   •nph4-1_and_arf19-1
compound
•Control   •Auxin
Quality Control: biological replicates
Treatment summary:
 genotype  compound  # replicates
 col_wt  Control  3
 col_wt  Auxin  3
 nph4-1(arf7)  Control  3
 nph4-1(arf7)  Auxin  3
 arf19-1  Control  3
 arf19-1  Auxin  3
 nph4-1_and_arf19-1  Control  3
 nph4-1_and_arf19-1  Auxin  3
Total hybridizations: 24
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE627)

Series_summary:
RNA samples were extracted from liquid cultured seedlings treated with or without auxin (5µM IAA) for 2 h.

Lines used for this study:
Columbia wild-type
nph4-1(arf7) single mutant
arf19-1 single mutant
nph4-1 arf19-1 double mutant

Treatment:
Control (EtOH)
Auxin treated (5µM IAA)
Keywords = Auxin
Keywords = Auxin response factor
Keywords: parallel sample


Series_overall_design:

Publication: none
Created: 2009-09-25 15:11:23
Last Update: 2009-09-29 15:21:11
GEO Accession GSE627
Submitter: PLEXdb Curator
Name: Yoko,,Okushima
Institution: Plant Gene Expression Center, U. C. Berkeley Department Plant and Microbial Biology Lab Athanasios Theologis Lab.
Head of Laboratory: Athanasios Theologis
email(s):
Homepage:

 
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