Search   for 
Find Your Gene ·  Publications ·  Tools ·  Gene List Suite ·  Expression Atlases ·  About PLEXdb ·  Feedback
Login ID:
Password:
Plants
Arabidopsis
Barley
Brachypodium
Citrus
Cotton
Grape
Maize
Medicago
Poplar
Rice
Soybean
Sugarcane
Tomato
Wheat
Pathogens & Symbionts
Search Experiments
Download Data
Gene List Suite
Tools
Your Account
Documentation
News
Personnel
Links
 Data Release Policy 
PLEXdb is committed to making expression data publicly available to researchers world-wide...
complete policy
 

Browse AraPLEX Experiment Data

Choose an experiment:
Group II-A WRKY transcription factors and early leaf senescence
Bekir Uelker, -- (--)
Experiment design (7 hybridizations)
strain
•Col-0 •WRKY40 •WRKY18 •WRKY60 •WRKY18/40 •WRKY53
pathogen inoculation
•Control •Pst-DC3000

This experiment has been imported by PLEXdb from NCBI GEO (GSE6829) Series_summary: In our laboratory we are interested in studying the functi...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

Show
Experiment Name: Group II-A WRKY transcription factors and early leaf senescence
Accession No: AT65
Microarray: ATH1-121501
Visibility: public
Experiment Type:
Experiment Factor(s):
strain
•Col-0   •WRKY40   •WRKY18   •WRKY60   •WRKY18/40   •WRKY53
pathogen inoculation
•Control   •Pst-DC3000
Quality Control: biological replicates
Treatment summary:
 strain  pathogen inoculation  # replicates
 Col-0  Control  1
 Col-0  Pst-DC3000  1
 WRKY40  Control  0
 WRKY40  Pst-DC3000  1
 WRKY18  Control  0
 WRKY18  Pst-DC3000  1
 WRKY60  Control  0
 WRKY60  Pst-DC3000  1
 WRKY18/40  Control  0
 WRKY18/40  Pst-DC3000  1
 WRKY53  Control  0
 WRKY53  Pst-DC3000  1
Total hybridizations: 7
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE6829)

Series_summary:
In our laboratory we are interested in studying the functions of WRKY zinc finger type transcription factors. There are 74 members of this gene family in Arabidopsis. WRKY factors are key regulators of distinct plant defense responses and are involved in certain developmental programs e.g. trichome development and plant leaf senescence. We would like to determine the functions of a small sub-group (group II-a) of WRKY factors in response to bacterial infection. Our aim is to compare and contrast the gene expression profiles of 3-week-old wild type and WRKY T-DNA knockout mutants grown in a growth chamber under long day growth conditions and subsequently challenged for 6 hours with the virulent bacterial pathogen /Pseudomonas syringae/ DC3000.
Experimenter name: Bekir Uelker
Experimenter phone: 49-221-5062-310
Experimenter fax: 49-221-5062-353
Experimenter department: Somsissich Lab
Experimenter institute: Max-Planck-Institute for Plant Breeding Research
Experimenter address: Department of Plant Microbe Interactions
Experimenter address: Carl-von-Linne-Weg 10
Experimenter address: Cologne
Experimenter zip/postal_code: 50829
Experimenter country: Germany
Keywords: genetic_modification_design

Series_overall_design:
7 samples were used in this experiment

PLEXdb Curator's Note:
This experiment appears to be the first of two parts, in conjunction with experiment GSE6830(not explicitly mentioned so at GEO). We have not been able to import GSE6830 because we were unable to unambiguously decipher the sample nomenclature and description.
Publication: none
Created: 2010-08-04 11:51:34
Last Update: 2010-08-04 12:19:01
Released: 2010-08-04
GEO Accession GSE6829
Submitter: PLEXdb Curator
Experimenter:
Name: Bekir Uelker
Institution: --
Head of Laboratory: --
email(s):
--
Homepage:

 
Copyright@2001-2013 The PLEXdb Group
All rights reserved.

For problems with the webpages contact PLEXdb webmasters