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Browse AraPLEX Experiment Data

Choose an experiment:
Arabidopsis pvip mutants
Dr. Dominik Schmidt, John Innes Centre, Department of Disease and Stress Biology (dominik.schmidt@charite.de,andy.maule@bbsrc.ac.uk)
Experiment design (6 hybridizations)
strain
•Col-0 wildtype •pvip1-pvip2 RNAi

This experiment has been imported by PLEXdb from NCBI GEO (GSE19341) Series_summary: Transcriptional comparison of Arabidopsis thaliana pvip1;...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Arabidopsis pvip mutants
Accession No: AT96
Microarray: ATH1-121501
Visibility: public
Experiment Type:
Experiment Factor(s):
strain
•Col-0 wildtype   •pvip1-pvip2 RNAi
Quality Control: biological replicates
Treatment summary:
 strain  # replicates
 Col-0 wildtype  3
 pvip1-pvip2 RNAi  3
Total hybridizations: 6
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE19341)

Series_summary:
Transcriptional comparison of Arabidopsis thaliana pvip1;pvip2 RNAi double mutants against Col-0 wildtype. Tissue used: whole rosettes of 4-week-old plants grown under short-day conditions (8h light; 20oC). 3 biological replicates for each. Control = Col-0 and mutant = pvip1;pvip2. PVIP = Potyvirus-VPg-interacting protein (Dunoyer et al. 2004 J. Virol. 78: 2301-2309).

Series_overall_design:
6 samples were used in this experiment.
Publication: none
Created: 2010-09-22 13:34:54
Last Update: 2010-09-22 13:48:45
Released: 2010-10-05
GEO Accession GSE19341
Submitter: PLEXdb Curator
Name: Dr. Dominik Schmidt
Institution: John Innes Centre, Department of Disease and Stress Biology
Head of Laboratory: Prof. Andy Maule
email(s):
Homepage:

 
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