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Browse BarleyBase Experiment Data

Choose an experiment:
Genetics of gene expression in barley
,
Experiment design (41 hybridizations)
genetic line
•SM004 •SM007 •SM012 •SM013 •SM022 •SM024 •SM027 •SM041 •SM043 •SM044 •SM046 •SM061 •SM063 •SM073 •SM074 •SM079 •SM085 •SM088 •SM089 •SM116 •SM130 •SM135 •SM136 •SM140 •SM141 •SM146 •SM152 •SM155 •SM160 •SM167 •SM169 •SM173 •SM177 •SM184 •SM200 •Steptoe •Morex

Comparison of mRNA accumulation in segregating doubled haploid barley lines

Submitted at NCBI GEO via PLEXdb.

[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Genetics of gene expression in barley
Accession No: BB21
Microarray: Barley1
Visibility: public
Experiment Type:
Experiment Factor(s):
genetic line
•SM004  •SM007  •SM012  •SM013  •SM022  •SM024  •SM027  •SM041  •SM043  •SM044  •SM046  •SM061  •SM063  •SM073  •SM074  •SM079  •SM085  •SM088  •SM089  •SM116  •SM130  •SM135  •SM136  •SM140  •SM141  •SM146  •SM152  •SM155  •SM160  •SM167  •SM169  •SM173  •SM177  •SM184  •SM200  •Steptoe  •Morex
Quality Control: biological replicates
Treatment summary:
 genetic line  # replicates
 SM004  3
 SM007  3
 SM012  3
 SM013  3
 SM022  3
 SM024  3
 SM027  3
 SM041  3
 SM043  3
 SM044  3
 SM046  3
 SM061  3
 SM063  3
 SM073  3
 SM074  3
 SM079  3
 SM085  3
 SM088  3
 SM089  3
 SM116  3
 SM130  3
 SM135  3
 SM136  3
 SM140  3
 SM141  3
 SM146  3
 SM152  3
 SM155  3
 SM160  3
 SM167  3
 SM169  3
 SM173  3
 SM177  3
 SM184  3
 SM200  3
 Steptoe  3
 Morex  3
Total hybridizations: 41
Description: Comparison of mRNA accumulation in segregating doubled haploid barley lines

Submitted at NCBI GEO via PLEXdb.

Publication: 'Gene expression quantitative trait locus analysis of 16 000 barley genes reveals a complex pattern of genome-wide transcriptional regulation', Potokina E, Druka A, Luo Z, Wise R, Waugh R, Kearsey M
The Plant Journal. 2007 Oct 18
pubmed: 17944808
'SFP Genotyping From Affymetrix Arrays Is Robust But Largely Detects Cis-acting Expression Regulators', Z. W. Luo, E. Potokina, A. Druka, R. Wise, R. Waugh and M. J. Kearsey
Genetics, Vol. 176, 789-800, June 2007, Copyright 2007 doi:10.1534/genetics.106.067843
pubmed: 17409081
Created: 2005-06-22 17:41:52
Last Update: 2011-10-13 14:44:10
GEO Accession GSE33394
Submitter: Arnis Druka
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