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Browse BarleyBase Experiment Data

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Mapping barley genes to chromosome arms by transcript profiling of wheat-barley ditelosomic chromosome addition lines
Hatice Bilgic, Univ. of Minnesota (bilgi001@umn.edu)
Experiment design (36 hybridizations)
genotype
•CS (Chinese Spring) •Betzes •1HS •2HS •3HS •3HL •4HS •4HL •5HS •5HL •7HS •7HL

We utilized the Barley1 Affymetrix GeneChip for comparative transcript analysis of Betzes barley, Chinese Spring wheat, and Chinese Spring–Betzes...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Mapping barley genes to chromosome arms by transcript profiling of wheat-barley ditelosomic chromosome addition lines
Accession No: BB55
Microarray: Barley1
Visibility: public
Experiment Type:
Experiment Factor(s):
genotype
•CS (Chinese Spring)  •Betzes  •1HS  •2HS  •3HS  •3HL  •4HS  •4HL  •5HS  •5HL  •7HS  •7HL
Quality Control: biological replicates
Treatment summary:
 genotype  # replicates
 CS (Chinese Spring)  3
 Betzes  3
 1HS  3
 2HS  3
 3HS  3
 3HL  3
 4HS  3
 4HL  3
 5HS  3
 5HL  3
 7HS  3
 7HL  3
Total hybridizations: 36
Description: We utilized the Barley1 Affymetrix GeneChip for comparative transcript analysis of Betzes barley, Chinese Spring wheat, and Chinese Spring–Betzes ditelosomic chromosome addition lines to physically map barley genes to their respective chromosome arm locations. We mapped barley genes to chromosome arms (1HS, 2HS, 2HL, 3HS, 3HL, 4HS, 4HL, 5HS, 5HL, 7HS, and 7HL) based on their transcript levels in the ditelosomic addition lines.

Submitted at NCBI GEO via PLEXdb.

Publication: 'Mapping barley genes to chromosome arms by transcript profiling of wheat-barley ditelosomic chromosome addition lines', Bilgic, H., Cho, S., Garvin, D.F., and Muehlbauer, G.J.
2007. Genome 50(9):898-906
pubmed: 18059553
Created: 2007-04-24 10:58:58
Last Update: 2008-08-05 11:42:09
GEO Accession GSE33400
Submitter: Hatice Bilgic
Name: Hatice Bilgic
Institution: Univ. of Minnesota
Head of Laboratory: Gary Muehlbauer
email(s):
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