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Transcriptome analysis of a breeding program pedigree
Maria Muñoz-Amatriain, University of Minnesota (munoz064@umn.edu,muehl003@umn.edu)
Experiment design (90 hybridizations)
genotype
•Bonanza •Cree •Dickson •Excel •Lacey •M1 •M44 •M46 •M55 •M66 •M78 •Manker •Morex •Robust •Stander
time
•0 days •3 days

Transcriptome comparison of 15 lines representing the University of Minnesota six-rowed malting breeding program at two time points of the malting...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Transcriptome analysis of a breeding program pedigree
Accession No: BB91
Microarray: Barley1
Visibility: public
Experiment Type:
Experiment Factor(s):
genotype
•Bonanza   •Cree   •Dickson   •Excel   •Lacey   •M1   •M44   •M46   •M55   •M66   •M78   •Manker   •Morex   •Robust   •Stander
time
•0 days  •3 days
Quality Control: biological replicates
Treatment summary:
 genotype  time  # replicates
 Bonanza  0 days  3
 Bonanza  3 days  3
 Cree  0 days  3
 Cree  3 days  3
 Dickson  0 days  3
 Dickson  3 days  3
 Excel  0 days  3
 Excel  3 days  3
 Lacey  0 days  3
 Lacey  3 days  3
 M1  0 days  3
 M1  3 days  3
 M44  0 days  3
 M44  3 days  3
 M46  0 days  3
 M46  3 days  3
 M55  0 days  3
 M55  3 days  3
 M66  0 days  3
 M66  3 days  3
 M78  0 days  3
 M78  3 days  3
 Manker  0 days  3
 Manker  3 days  3
 Morex  0 days  3
 Morex  3 days  3
 Robust  0 days  3
 Robust  3 days  3
 Stander  0 days  3
 Stander  3 days  3
Total hybridizations: 90
Description: Transcriptome comparison of 15 lines representing the University of Minnesota six-rowed malting breeding program at two time points of the malting process: 'out of steep' and '3 days of germination'. Three replicates of each genotype and time point were accomplished.

Submitted at NCBI GEO via PLEXdb.

Publication: 'Transcriptome analysis of a barley breeding program examines gene expression diversity and reveals target genes for malting quality improvement', Maria Munoz-Amatriain, Yanwen Xiong, Mark R Schmitt, Hatice Bilgic, Allen D Budde, Shiaoman Chao, Kevin P Smith, Gary J Muehlbauer
BMC Genomics 11:653 (DOI: 10.1186/1471-2164-11-653 )
pubmed: 21092286
Created: 2010-02-28 16:08:13
Last Update: 2010-03-11 13:21:16
Released: 2010-10-01
GEO Accession GSE24534
Submitter: Maria Muñoz
Name: Maria Muñoz-Amatriain
Institution: University of Minnesota
Head of Laboratory: Gary J. Muehlbauer
email(s):
Homepage:

 
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