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Browse BrachyPLEX Experiment Data

Choose an experiment:
Brachypodium Abiotic Stress Gene Expression
Sam Fox, Oregon State University (foxsa@onid.orst.edu)
Experiment design (119 hybridizations)
treatment
•Salt •Salt Control •Drought •Drought Control •High Light •Cold •Heat •Control (High Light, Cold, Heat)
time
•1 hrs •2 hrs •5 hrs •10 hrs •24 hrs

Approximately 28 days after germination, Brachypodium seedlings were exposed to high salinity (500mM), high light, heat (42C), cold(4C) and drought...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Brachypodium Abiotic Stress Gene Expression
Accession No: BD2
Microarray: Brachy
Visibility: public
Experiment Type:
Experiment Factor(s):
treatment
•Salt   •Salt Control   •Drought   •Drought Control   •High Light   •Cold   •Heat   •Control (High Light, Cold, Heat)
time
•1 hrs  •2 hrs  •5 hrs  •10 hrs  •24 hrs
Quality Control: biological replicates
Treatment summary:
 treatment  time  # replicates
 Salt  1 hrs  3
 Salt  2 hrs  3
 Salt  5 hrs  3
 Salt  10 hrs  3
 Salt  24 hrs  3
 Salt Control  1 hrs  3
 Salt Control  2 hrs  3
 Salt Control  5 hrs  3
 Salt Control  10 hrs  3
 Salt Control  24 hrs  3
 Drought  1 hrs  3
 Drought  2 hrs  3
 Drought  5 hrs  3
 Drought  10 hrs  3
 Drought  24 hrs  3
 Drought Control  1 hrs  3
 Drought Control  2 hrs  3
 Drought Control  5 hrs  3
 Drought Control  10 hrs  3
 Drought Control  24 hrs  3
 High Light  1 hrs  3
 High Light  2 hrs  3
 High Light  5 hrs  3
 High Light  10 hrs  3
 High Light  24 hrs  3
 Cold  1 hrs  3
 Cold  2 hrs  3
 Cold  5 hrs  3
 Cold  10 hrs  3
 Cold  24 hrs  3
 Heat  1 hrs  3
 Heat  2 hrs  3
 Heat  5 hrs  2
 Heat  10 hrs  3
 Heat  24 hrs  3
 Control (High Light, Cold, Heat)  1 hrs  3
 Control (High Light, Cold, Heat)  2 hrs  3
 Control (High Light, Cold, Heat)  5 hrs  3
 Control (High Light, Cold, Heat)  10 hrs  3
 Control (High Light, Cold, Heat)  24 hrs  3
Total hybridizations: 119
Description: Approximately 28 days after germination, Brachypodium seedlings were exposed to high salinity (500mM), high light, heat (42C), cold(4C) and drought stresses (21% PEG). Five samples were collected over a 24 hour period (1h, 2h, 5h, 10h, 24h) and three replicates were collected for each time point.
Publication: none
Created: 2011-02-02 16:03:25
Last Update: 2012-04-06 12:38:02
Submitter: jessica robyn murray
Name: Sam Fox
Institution: Oregon State University
Head of Laboratory: Todd Mockler
email(s):
Homepage:

 
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