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Browse CitrusPLEX Experiment Data

Choose an experiment:
Lemon_acidity
Mikeal L. Roose, University of California, Riverside (mikeal.roose@ucr.edu)
Experiment design (18 hybridizations)
genotype
•Faris sweet lemon •Faris acid lemon •Frost Lisbon lemon
developmental stage
•PO:0007009 FF.01 fruit size 30%, •PO:0007050 FR.03 late stage of fruit ripening,

Samples from fruit juice vesicle tissue from three lemon genotypes (Frost Lisbon, Faris "sour" and Faris "sweet") differing in fruit acidity were c...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Lemon_acidity
Accession No: CT1
Microarray: Citrus
Visibility: public
Experiment Type:
Experiment Factor(s):
genotype
•Faris sweet lemon   •Faris acid lemon   •Frost Lisbon lemon
developmental stage
•PO:0007009 FF.01 fruit size 30%,   •PO:0007050 FR.03 late stage of fruit ripening,
Quality Control: biological replicates
Treatment summary:
 genotype  developmental stage  # replicates
 Faris sweet lemon  PO:0007009 FF.01 fruit size 30%,  3
 Faris sweet lemon  PO:0007050 FR.03 late stage of fruit ripening,  3
 Faris acid lemon  PO:0007009 FF.01 fruit size 30%,  3
 Faris acid lemon  PO:0007050 FR.03 late stage of fruit ripening,  3
 Frost Lisbon lemon  PO:0007009 FF.01 fruit size 30%,  3
 Frost Lisbon lemon  PO:0007050 FR.03 late stage of fruit ripening,  3
Total hybridizations: 18
Description: Samples from fruit juice vesicle tissue from three lemon genotypes (Frost Lisbon, Faris "sour" and Faris "sweet") differing in fruit acidity were compared at two developmental timepoints (immature, mature). Faris lemon appears to be a graft chimera with the L2 layer derived from normal acid lemon and layer L1 from Millsweet limetta or a closely related genotype. Fruit of Faris sour and Faris sweet grew on different branches of the same tree, with sour fruit developing on branches with L1 and L2 from acid lemon.
Publication: 'High and low acid lemons: origin and transcriptome comparisons', Aprile, A., Federici, C. T., Close, T.. Roose, M. L., De Bellis, L and Cattivelli L.
Acta Horticulturae 892:37-42(2011).'Expression of the H+-ATPase AHA10 proton pump is associated with citric acid accumulation in lemon juice sac cells', Aprile, A., Federici, C., Close, T. J., De Bellis, L. and Cattivelli L and Roose, M. L.
Funct. Integr. Genomics 11:551-563 (2011).
pubmed: 21556928
Created: 2008-06-09 18:08:57
Last Update: 2008-06-23 15:15:35
GEO Accession GSE12804
Submitter: Mikeal Roose
Name: Mikeal L. Roose
Institution: University of California, Riverside
Head of Laboratory: Mikeal L. Roose
email(s):
Homepage:

 
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