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Browse CitrusPLEX Experiment Data

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Transcriptional analysis of the sweet orange interaction with the citrus canker pathogens
Celso,Eduardo,Benedetti, Brazilian Synchrotron Light Laboratory (celso@lnls.br)
Experiment design (11 hybridizations)
pathogen infection
•Xac •Xaa •mock
time
•6 habi •48 habi

This experiment has been imported by PLEXdb from NCBI GEO (GSE10798)

Series_summary:
We have used the citrus GeneChip array (GPL5731...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Transcriptional analysis of the sweet orange interaction with the citrus canker pathogens
Accession No: CT2
Microarray: Citrus
Visibility: public
Experiment Type:
Experiment Factor(s):
pathogen infection
•Xac   •Xaa   •mock
time
•6 habi  •48 habi
Quality Control: biological replicates
Treatment summary:
 pathogen infection  time  # replicates
 Xac  6 habi  2
 Xac  48 habi  2
 Xaa  6 habi  2
 Xaa  48 habi  2
 mock  6 habi  2
 mock  48 habi  1
Total hybridizations: 11
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE10798)

Series_summary:
We have used the citrus GeneChip array (GPL5731) to survey the transcription profiles of sweet orange in response to the bacterial pathogens Xanthomonas axonopodis pv. citri (Xac) and Xanthomonas axonopodis pv. aurantifolii (Xaa). Xac is the causal agent of the citrus canker disease on a wide range of citrus species.
Keywords: Comprehensive transcriptional analysis of the Citrus-Xanthomonas interaction


SUBMITTER_CITATION: Transcriptional analysis of the sweet orange interaction with the citrus canker pathogens Xanthomonas axonopodis pv. citri and Xanthomonas axonopodis pv. aurantifolii. RAÚL ANDRÉS CERNADAS, LUCIANA RODRIGUES CAMILLO AND CELSO EDUARDO BENEDETTI. MOLECULAR PLANT PATHOLOGY (2008) 9 ( 5 ) , 000-000. DOI: 10.1111/J.1364-3703.2008.00486.X

Series_overall_design:
Adult leaves of sweet orange were infiltrated with the bacterial suspensions or water (mock control). Two stages were selected after bacterial infiltration for RNA extraction and hybridization on Affymetrix microarrays. In total, these experiments consist of two biological replicates of six samples: water-infiltrated leaves, Xaa-infiltrated leaves and Xac-infiltrated leaves, at both 6 and 48 (habi).

PLEXdb Curator's Note:
We have excluded the GEO sample "GSM272743" corresponding to "pathogen infection=mock|time=48 habi" from this data set. The corresponding CEL file proved to be defective in our tests. As a result, this PLEXdb version has 11 hybrizations instead of 12 at GEO.
Publication: 'Transcriptional analysis of the sweet orange interaction with the citrus canker pathogens Xanthomonas axonopodis pv. citri and Xanthomonas axonopodis pv. aurantifolii.', RAÚL ANDRÉS CERNADAS, LUCIANA RODRIGUES CAMILLO AND CELSO EDUARDO BENEDETTI
MOLECULAR PLANT PATHOLOGY (2008) 9 ( 5 )
pubmed: 19018992
Created: 2009-07-02 13:53:19
Last Update: 2011-06-21 16:00:48
Released: 2011-05-24
GEO Accession GSE10798
Submitter: PLEXdb Curator
Name: Celso,Eduardo,Benedetti
Institution: Brazilian Synchrotron Light Laboratory
Head of Laboratory: --
email(s):
Homepage:

 
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