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Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
sucheta,,Tripathy, Virginia Tech, Blacksburg, VA (sutripa@vbi.vt.edu)
Experiment design (128 hybridizations)
cultivar
•ATHOW •CONRAD •GENERAL •WILLIAMS •OX20-8 •V716370 •P1291327 •SLOAN
time
•3 dpi •5 dpi
treatment
•mock •inoculated

This experiment has been imported by PLEXdb from NCBI GEO (GSE7124)

Series_summary: Identify plant and pathogen genes differentially...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
Accession No: GM13
Microarray: Soybean
Visibility: public
Experiment Type:
Experiment Factor(s):
cultivar
•ATHOW   •CONRAD   •GENERAL   •WILLIAMS   •OX20-8   •V716370   •P1291327   •SLOAN
time
•3 dpi  •5 dpi
treatment
•mock   •inoculated
Quality Control: biological replicates
Treatment summary:
 cultivar  time  treatment  # replicates
 ATHOW  3 dpi  mock  4
 ATHOW  3 dpi  inoculated  4
 ATHOW  5 dpi  mock  4
 ATHOW  5 dpi  inoculated  4
 CONRAD  3 dpi  mock  4
 CONRAD  3 dpi  inoculated  4
 CONRAD  5 dpi  mock  4
 CONRAD  5 dpi  inoculated  4
 GENERAL  3 dpi  mock  4
 GENERAL  3 dpi  inoculated  4
 GENERAL  5 dpi  mock  4
 GENERAL  5 dpi  inoculated  4
 WILLIAMS  3 dpi  mock  4
 WILLIAMS  3 dpi  inoculated  4
 WILLIAMS  5 dpi  mock  4
 WILLIAMS  5 dpi  inoculated  4
 OX20-8  3 dpi  mock  4
 OX20-8  3 dpi  inoculated  4
 OX20-8  5 dpi  mock  4
 OX20-8  5 dpi  inoculated  4
 V716370  3 dpi  mock  4
 V716370  3 dpi  inoculated  4
 V716370  5 dpi  mock  4
 V716370  5 dpi  inoculated  4
 P1291327  3 dpi  mock  4
 P1291327  3 dpi  inoculated  4
 P1291327  5 dpi  mock  4
 P1291327  5 dpi  inoculated  4
 SLOAN  3 dpi  mock  4
 SLOAN  3 dpi  inoculated  4
 SLOAN  5 dpi  mock  4
 SLOAN  5 dpi  inoculated  4
Total hybridizations: 128
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE7124)

Series_summary: Identify plant and pathogen genes differentially expressed during P. sojae infection of soybean cultivars differing in quantitative resistance, by using Affymetrix Soybean Genome Array analysis.

Keywords: genotypic variation on quantitative resistance

Series_overall_design:
RNA samples from mock-inoculated soybean tissue contain 2%-16% spike-in RNA from Phytophthora sojae mycelium grown in liquid sucrose-salts medium.
4 Experimental Replicates x 8 cultivars x 2 Treatments (inoculated or mock) x 2 Timepoints (72hr or 120hr) = 128 samples in total
Publication: none
Created: 2009-06-03 11:35:42
Last Update: 2009-06-03 17:06:51
GEO Accession GSE7124
Submitter: PLEXdb Curator
Name: sucheta,,Tripathy
Institution: Virginia Tech, Blacksburg, VA
Head of Laboratory: --
email(s):
Homepage:

 
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