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Comprehensive molecular characterization of the soybean rust disease [Embrapa-Soja - Iowa State Univ; 2005]
Martijn van de Mortel, Iowa State University (vdmortel@iastate.edu)
Experiment design (120 hybridizations)
genotype
•PI230970 •Embrapa48
time
•006 •012 •018 •024 •036 •048 •072 •096 •120 •168
Treated or untreated
•SBR •Mock

Experimental design: 2 genotypes: PI230970 (resistant USDA Plant Introduction (PI) line containing SBR Rpp2 resistance gene) & Embrapa-48 (suscept...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Comprehensive molecular characterization of the soybean rust disease [Embrapa-Soja - Iowa State Univ; 2005]
Accession No: GM2
Microarray: Soybean
Visibility: public
Experiment Type:
Experiment Factor(s):
genotype
•PI230970  •Embrapa48
time
•006  •012  •018  •024  •036  •048  •072  •096  •120  •168
Treated or untreated
•SBR  •Mock
Quality Control: biological replicates
Treatment summary:
 genotype  time  Treated or untreated  # replicates
 PI230970  006  SBR  3
 PI230970  006  Mock  3
 PI230970  012  SBR  3
 PI230970  012  Mock  3
 PI230970  018  SBR  3
 PI230970  018  Mock  3
 PI230970  024  SBR  3
 PI230970  024  Mock  3
 PI230970  036  SBR  3
 PI230970  036  Mock  3
 PI230970  048  SBR  3
 PI230970  048  Mock  3
 PI230970  072  SBR  3
 PI230970  072  Mock  3
 PI230970  096  SBR  3
 PI230970  096  Mock  3
 PI230970  120  SBR  3
 PI230970  120  Mock  3
 PI230970  168  SBR  3
 PI230970  168  Mock  3
 Embrapa48  006  SBR  3
 Embrapa48  006  Mock  3
 Embrapa48  012  SBR  3
 Embrapa48  012  Mock  3
 Embrapa48  018  SBR  3
 Embrapa48  018  Mock  3
 Embrapa48  024  SBR  3
 Embrapa48  024  Mock  3
 Embrapa48  036  SBR  3
 Embrapa48  036  Mock  3
 Embrapa48  048  SBR  3
 Embrapa48  048  Mock  3
 Embrapa48  072  SBR  3
 Embrapa48  072  Mock  3
 Embrapa48  096  SBR  3
 Embrapa48  096  Mock  3
 Embrapa48  120  SBR  3
 Embrapa48  120  Mock  3
 Embrapa48  168  SBR  3
 Embrapa48  168  Mock  3
Total hybridizations: 120
Description: Experimental design:
2 genotypes: PI230970 (resistant USDA Plant Introduction (PI) line containing SBR Rpp2 resistance gene) & Embrapa-48 (susceptible Brazilian cultivar)
2 treatments: Soybean rust challenge & mock infection
3 replications
10 time points: 6, 12, 18, 24, 36, 48, 72, 96, 120, 168hai
TOTAL: 120 Affymetrix GeneChip(R) Soybean Genome Arrays

Submitted at NCBI GEO via PLEXdb.

Publication: 'Distinct biphasic mRNA changes in response to Asian soybean rust infection', Martijn van de Mortel, Justin C. Recknor, Michelle A. Graham, Dan Nettleton, Jaime D. Dittman, Rex T. Nelson, Cláudia V. Godoy, Ricardo V. Abdelnoor, Álvaro M.R. Almeida, Thomas J. Baum, Steven A. Whitham
Molecular Plant-Microbe Interactions (2007) Volume 20, Issue 8, pages 887-899. doi:10.1094/MPMI-20-8-0887
pubmed: 17722693
Created: 2007-03-10 14:17:36
Last Update: 2007-12-20 15:11:49
GEO Accession GSE33410
Submitter: Martijn van de Mortel
Name: Martijn van de Mortel
Institution: Iowa State University
Head of Laboratory: Baum / Whitham
email(s):
Homepage:

 
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