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Browse SoyPLEX Experiment Data

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Transcript profiling of soybean msh1 RNAi transgenic lines
Ying-Zhi Xu, University of Nebraska, Department of Center for Plant Science Innovation, Lincoln, Nebraska (ying-zhi2@unl.edu)
Experiment design (10 hybridizations)
genotype
•wild type •msh1 RNAi variegation •msh1 RNAi stunted

This experiment has been imported by PLEXdb from NCBI GEO (GSE30112)

Series_summary:
The soybean msh1 RNAi transgenic line show vario...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Transcript profiling of soybean msh1 RNAi transgenic lines
Accession No: GM46
Microarray: Soybean
Visibility: public
Experiment Type:
Experiment Factor(s):
genotype
•wild type   •msh1 RNAi variegation   •msh1 RNAi stunted
Quality Control: biological replicates
Treatment summary:
 genotype  # replicates
 wild type  4
 msh1 RNAi variegation  3
 msh1 RNAi stunted  3
Total hybridizations: 10
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE30112)

Series_summary:
The soybean msh1 RNAi transgenic line show various growth phenotype. We use microarray analysis to characterize gene expression pattern for two of the phenotypes - variegation and stunted growth.

Series_overall_design:
Wild type and msh1 RNAi variegated and stunted tissues were collected for RNA extration and hybridization on Affymetrix.
Publication: 'MutS HOMOLOG1 is a nucleoid protein that alters mitochondrial and plastid properties and plant response to high light.', Xu YZ, Arrieta-Montiel MP, Virdi KS, de Paula WB, Widhalm JR, Basset GJ, Davila JI, Elthon TE, Elowsky CG, Sato SJ, Clemente TE, Mackenzie SA.
Plant Cell 2011 Sep;23(9):3428-41.
pubmed: 21934144
Created: 2011-12-14 10:01:22
Last Update: 2011-12-14 11:53:20
Released: 2011-12-14
GEO Accession GSE30112
Submitter: PLEXdb Curator
Name: Ying-Zhi Xu
Institution: University of Nebraska, Department of Center for Plant Science Innovation, Lincoln, Nebraska
Head of Laboratory: Sally Mackenzie
email(s):
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