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Transcription profiling of One month old Gossypium herbaceum plant leaf during drought and watered condition
Samir Sawant, National Botanical Research Institute, Department of Plant Molecular Biology Lab, Lucknow, India (samirsawant@nbri.res.in, deept_mbi@yahoo.co.in)
Experiment design (12 hybridizations)
genotype
•Tolerant •Sensitive
stress condition
•Drought •Water

This experiment has been imported by PLEXdb from NCBI GEO (GSE26522)

Series_summary:
Comparative genomics has emerged as a promising ...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Transcription profiling of One month old Gossypium herbaceum plant leaf during drought and watered condition
Accession No: GO4
Microarray: Cotton
Visibility: public
Experiment Type:
Experiment Factor(s):
genotype
•Tolerant   •Sensitive
stress condition
•Drought   •Water
Quality Control: biological replicates
Treatment summary:
 genotype  stress condition  # replicates
 Tolerant  Drought  3
 Tolerant  Water  3
 Sensitive  Drought  3
 Sensitive  Water  3
Total hybridizations: 12
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE26522)

Series_summary:
Comparative genomics has emerged as a promising means of unravelling the molecular networks underlying complex traits such as drought tolerance.We used Affymetrix microarray to detail the global programme of gene expression underlying in drought and watered condition and identified distinct classes of up-regulated genes during this process.leaf tissue were used for the expression analysis during watered and drought condition with three biological replicates for each case.

Series_overall_design:
Here we assess the genotype-dependent component of the drought-induced transcriptome response in two contrasting cotton (Gossypium spp) genotypes differing in drought tolerance. Leaf tissue were used during drought and watered condtion for RNA extraction and hybridization on Affymetrix microarrays. We sought to obtain differential expression pattern during drought and watered condition.
Publication: none
Created: 2011-08-03 13:08:41
Last Update: 2011-08-05 12:20:17
Released: 2011-08-05
GEO Accession GSE26522
Submitter: PLEXdb Curator
Name: Samir Sawant
Institution: National Botanical Research Institute, Department of Plant Molecular Biology Lab, Lucknow, India
Head of Laboratory: Samir Sawant
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