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Browse CottonPLEX Experiment Data

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Global gene expression analysis of cotton (Gossypium hirsutum L.) under drought stress in leaf tissue and during fibre development stages.
Padmalatha K.V., NRCPB, Department of Biotechnology, New Dehli, India (kv.padmalatha@gmail.com)
Experiment design (30 hybridizations)
stress condition
•control •drought
developmental stage name
•leaf •0 dpa •5 dpa •10 dpa •20 dpa

This experiment has been imported by PLEXdb from NCBI GEO (GSE29810)

Series_summary:
This SuperSeries is composed of the following sub...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Global gene expression analysis of cotton (Gossypium hirsutum L.) under drought stress in leaf tissue and during fibre development stages.
Accession No: GO9
Microarray: Cotton
Visibility: public
Experiment Type:
Experiment Factor(s):
stress condition
•control   •drought
developmental stage name
•leaf   •0 dpa   •5 dpa   •10 dpa   •20 dpa
Quality Control: biological replicates
Treatment summary:
 stress condition  developmental stage name  # replicates
 control  leaf  3
 control  0 dpa  3
 control  5 dpa  3
 control  10 dpa  3
 control  20 dpa  3
 drought  leaf  3
 drought  0 dpa  3
 drought  5 dpa  3
 drought  10 dpa  3
 drought  20 dpa  3
Total hybridizations: 30
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE29810)

Series_summary:
This SuperSeries is composed of the following subset Series:
GSE29566: Global gene expression analysis of cotton (Gossypium hirsutum L.) under drought stress in leaf tissue.
GSE29567: Global gene expression analysis of cotton (Gossypium hirsutum L.) under drought stress during fibre development stages.

Series_overall_design:
Refer to individual Series


PLEXdb Curators Note:
Subseries GSE29566 (GO7) and GSE29567(GO8) are part of the superseries *GSE29810 (GO9) at GEO.
Publication: 'Genome-wide transcriptomic analysis of cotton under drought stress reveal significant down-regulation of genes and pathways involved in fibre elongation and up-regulation of defense responsive genes.', Padmalatha KV, Dhandapani G, Kanakachari M, Kumar S, Dass A, Patil DP, Rajamani V, Kumar K, Pathak R, Rawat B, Leelavathi S, Reddy PS, Jain N, Powar KN, Hiremath V, Katageri IS, Reddy MK, Solanke AU, Reddy VS, Kumar PA.
Plant Mol Biol 2012 Feb;78(3):223-46.
pubmed: 22143977
Created: 2012-07-19 12:09:25
Last Update: 2012-07-25 11:32:30
Released: 2012-07-25
GEO Accession GSE29810
Submitter: PLEXdb Curator
Name: Padmalatha K.V.
Institution: NRCPB, Department of Biotechnology, New Dehli, India
Head of Laboratory: Vanga Siva Reddy
email(s):
Homepage:

 
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