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Microarray analysis of gene expression from different developmental stages of the tomato fruit
Irina Mohorianu, University of East Anglia, School of Computing Sciences, Norwich, United Kingdom (i.mohorianu@uea.ac.uk)
Experiment design (10 hybridizations)
developmental stage name
•closed bud before flower blooming •open flower •fruit 1-3mm •fruit 5-7mm •fruit 11-14mm •mature green fruit •breaker stage fruit •3d post breaker •5d post breaker •7d post breaker

This experiment has been imported by PLEXdb from NCBI GEO (GSE22300)

Series_summary:
The goal of this research was to measure the gen...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Microarray analysis of gene expression from different developmental stages of the tomato fruit
Accession No: LE21
Microarray: tomato10k
Visibility: public
Experiment Type:
Experiment Factor(s):
developmental stage name
•closed bud before flower blooming   •open flower   •fruit 1-3mm   •fruit 5-7mm   •fruit 11-14mm   •mature green fruit   •breaker stage fruit   •3d post breaker   •5d post breaker   •7d post breaker
Quality Control: biological replicates
Treatment summary:
 developmental stage name  # replicates
 closed bud before flower blooming  1
 open flower  1
 fruit 1-3mm  1
 fruit 5-7mm  1
 fruit 11-14mm  1
 mature green fruit  1
 breaker stage fruit  1
 3d post breaker  1
 5d post breaker  1
 7d post breaker  1
Total hybridizations: 10
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE22300)

Series_summary:
The goal of this research was to measure the gene expression levels thoughout 10 stages of tomato fruit development. Whole buds, flowers or fruits were collected at various developmental timepoints.

Series_overall_design:
Total RNA was extracted from 10 stages of flower and fruit development. A single technical and biological repeat was performed. cDNA was amplified and labelled using standard Affymetrix protocols.
Publication: 'Diverse correlation patterns between microRNAs and their targets during tomato fruit development indicates different modes of microRNA actions.', Lopez-Gomollon S, Mohorianu I, Szittya G, Moulton V, Dalmay T.
Planta 2012 Aug 26.
pubmed: 22922939
Created: 2012-10-16 12:06:58
Last Update: 2012-10-16 12:53:40
Released: 2012-10-18
GEO Accession GSE22300
Submitter: PLEXdb Curator
Name: Irina Mohorianu
Institution: University of East Anglia, School of Computing Sciences, Norwich, United Kingdom
Head of Laboratory: Tamas Dalmay
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