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Browse MedicagoPLEX Experiment Data

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Identification of putative H2O2 regulated genes during the establishment of the Sinorhizobi...
Sandrine Balzergue, INRA, Department of URGV, Evry, France (balzerg@evry.inra.fr)
Experiment design (8 hybridizations)
pathogen inoculation
•DMSO-H2O(mock) •DPI-H2O(mock) •MSO-INOC(S. melitloti) •DPI-INCO(S. Meliloti)

This experiment has been imported by PLEXdb from NCBI GEO (GSE15866)

Series_summary:
The involvement of ROS in the legume – Rhizobi...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Identification of putative H2O2 regulated genes during the establishment of the Sinorhizobi...
Accession No: ME13
Microarray: Medicago61k
Visibility: public
Experiment Type:
Experiment Factor(s):
pathogen inoculation
•DMSO-H2O(mock)   •DPI-H2O(mock)   •MSO-INOC(S. melitloti)   •DPI-INCO(S. Meliloti)
Quality Control: biological replicates
Treatment summary:
 pathogen inoculation  # replicates
 DMSO-H2O(mock)  2
 DPI-H2O(mock)  2
 MSO-INOC(S. melitloti)  2
 DPI-INCO(S. Meliloti)  2
Total hybridizations: 8
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE15866)

Series_summary:
The involvement of ROS in the legume – Rhizobium symbiotic interaction has been highlighted (Santos et al., 2001; Rubio et al., 2004). This interaction is characterized by the formation of a new organ on the root, the nodule and by the penetration, in parallel, of the bacteria into the root tissue via an infection thread (IT) (Parniske and Downie, 2003; Gage, 2004). H2O2 production has been shown in ITs during the Medicago – Sinorhizobium meliloti interaction (Santos et al., 2001). Moreover, S. meliloti mutants impaired in H2O2 detoxification mechanism possess in planta symbiotic phenotypes. As H2O2 production is known to orchestrate plant gene expression, our goal is focused on identifying the H2O2 regulated genes in the symbiotic process. We focus our analysis in the M. truncatula transcriptome as we are characterising the S. meliloti H2O2 transcriptome. -M. truncatula seedlings were grown in axenic condition on modified Fahraeus medium during seven days. Then they were transferred on new plates supplemented either with dimethyl sulfoxide (DMSO, mock treatement) or diphenylene iodonium (DPI, 10 µM). Twenty four hours later, they were inoculated either with water (mock inoculation; DMSO-H2O and DPI-H2O) or wild type S. meliloti 2011 strain (DMSO-INOC and DPI-INOC). Roots without apexes were harvested 48 hours after inoculation. After RNA extraction (Trizol), quality of the treatment was verified by RT-PCR (ENOD11: inoculation efficiency; GSHS1: DNA contamination; MTC27: constitutive)
Keywords: treated vs untreated comparison

Series_overall_design:
8 arrays - Medicago
Publication: none
Created: 2011-06-23 11:25:05
Last Update: 2011-06-27 14:19:42
Released: 2011-06-27
GEO Accession GSE15866
Submitter: PLEXdb Curator
Name: Sandrine Balzergue
Institution: INRA, Department of URGV, Evry, France
Head of Laboratory: Sandrine Balzergue
email(s):
Homepage:

 
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