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Browse MedicagoPLEX Experiment Data

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Medicago truncatula wild-type and mutant plantlet roots treated with symbiotic lipochitooligosaccharides
Helge Kuster, Leibniz Universität Hannover, Institut für Pflanzengenetik, Hannover, Germany (helge.kuester@genetik.uni-hannover.de)
Experiment design (60 hybridizations)
genotype
•NFP mutant •DM13 mutant •Jemalong A17
compound
•sMyc-LCOs •nsMyc-LCOs •s/nsMyc-LCOs •Myc-LCOs-control •Nod-LCOs •Nod-LCO-control •control
time
•6 hrs •24 hrs

This experiment has been imported by PLEXdb from NCBI GEO (GSE33638)

Series_summary:
This SuperSeries is composed of the following su...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Medicago truncatula wild-type and mutant plantlet roots treated with symbiotic lipochitooligosaccharides
Accession No: ME24
Microarray: Medicago61k
Visibility: public
Experiment Type:
Experiment Factor(s):
genotype
•NFP mutant   •DM13 mutant   •Jemalong A17
compound
•sMyc-LCOs   •nsMyc-LCOs   •s/nsMyc-LCOs   •Myc-LCOs-control   •Nod-LCOs   •Nod-LCO-control   •control
time
•6 hrs  •24 hrs
Quality Control: biological replicates
Treatment summary:
 genotype  compound  time  # replicates
 NFP mutant  sMyc-LCOs  6 hrs  3
 NFP mutant  sMyc-LCOs  24 hrs  0
 NFP mutant  nsMyc-LCOs  6 hrs  3
 NFP mutant  nsMyc-LCOs  24 hrs  0
 NFP mutant  s/nsMyc-LCOs  6 hrs  3
 NFP mutant  s/nsMyc-LCOs  24 hrs  0
 NFP mutant  Myc-LCOs-control  6 hrs  0
 NFP mutant  Myc-LCOs-control  24 hrs  0
 NFP mutant  Nod-LCOs  6 hrs  0
 NFP mutant  Nod-LCOs  24 hrs  0
 NFP mutant  Nod-LCO-control  6 hrs  0
 NFP mutant  Nod-LCO-control  24 hrs  0
 NFP mutant  control  6 hrs  3
 NFP mutant  control  24 hrs  0
 DM13 mutant  sMyc-LCOs  6 hrs  3
 DM13 mutant  sMyc-LCOs  24 hrs  0
 DM13 mutant  nsMyc-LCOs  6 hrs  3
 DM13 mutant  nsMyc-LCOs  24 hrs  0
 DM13 mutant  s/nsMyc-LCOs  6 hrs  3
 DM13 mutant  s/nsMyc-LCOs  24 hrs  0
 DM13 mutant  Myc-LCOs-control  6 hrs  0
 DM13 mutant  Myc-LCOs-control  24 hrs  0
 DM13 mutant  Nod-LCOs  6 hrs  0
 DM13 mutant  Nod-LCOs  24 hrs  0
 DM13 mutant  Nod-LCO-control  6 hrs  0
 DM13 mutant  Nod-LCO-control  24 hrs  0
 DM13 mutant  control  6 hrs  3
 DM13 mutant  control  24 hrs  0
 Jemalong A17  sMyc-LCOs  6 hrs  3
 Jemalong A17  sMyc-LCOs  24 hrs  3
 Jemalong A17  nsMyc-LCOs  6 hrs  3
 Jemalong A17  nsMyc-LCOs  24 hrs  3
 Jemalong A17  s/nsMyc-LCOs  6 hrs  3
 Jemalong A17  s/nsMyc-LCOs  24 hrs  3
 Jemalong A17  Myc-LCOs-control  6 hrs  3
 Jemalong A17  Myc-LCOs-control  24 hrs  3
 Jemalong A17  Nod-LCOs  6 hrs  3
 Jemalong A17  Nod-LCOs  24 hrs  3
 Jemalong A17  Nod-LCO-control  6 hrs  3
 Jemalong A17  Nod-LCO-control  24 hrs  3
 Jemalong A17  control  6 hrs  0
 Jemalong A17  control  24 hrs  0
Total hybridizations: 60
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE33638)

Series_summary:
This SuperSeries is composed of the following subset Series:
GSE33636: Gene expression data from Medicago truncatula plantlet roots treated with symbiotic lipochitooligosaccharides (LCOs).
GSE33637: Gene expression data from Medicago truncatula mutant plantlet roots treated with Myc-LCOs.

Series_overall_design:
Refer to individual Series


PLEXdb Curator's Note:
Subseries GSE33636 (ME22) and GSE33637(ME23) are part of this superseries *GSE33638 (ME24) at GEO.
Publication: 'Transcriptional responses towards diffusible signals from symbiotic microbes reveal MtNFP- and MtDMI3-dependent reprogramming of host gene expression by AM fungal LCOs.', Czaja LF, Hogekamp C, Lamm P, Maillet F, Andres Martinez E, Samain E, Dénarié J, Küster H, Hohnjec N.
Plant Physiol 2012 May 31.
pubmed: 22652128
Created: 2012-06-28 12:41:21
Last Update: 2012-06-28 16:52:02
Released: 2012-07-03
GEO Accession GSE33638
Submitter: PLEXdb Curator
Name: Helge Kuster
Institution: Leibniz Universität Hannover, Institut für Pflanzengenetik, Hannover, Germany
Head of Laboratory: Helge Kuster
email(s):
Homepage:

 
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