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Browse RicePLEX Experiment Data

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Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
Ute,Baumann, University of Adelaide, Hartley Grove, Glen Osmond, SA. Australia (ute.baumann@adelaide.edu.au)
Experiment design (23 hybridizations)
genotype
•FL478 •IR29 •IR63731 •Pokkali
stress condition
•Control •Salt

This experiment has been imported by PLEXdb from NCBI GEO (GSE14403)

Series_summary:
Keywords: stress response

Series_overal...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
Accession No: OS30
Microarray: Rice57k
Visibility: public
Experiment Type:
Experiment Factor(s):
genotype
•FL478   •IR29   •IR63731   •Pokkali
stress condition
•Control   •Salt
Quality Control: biological replicates
Treatment summary:
 genotype  stress condition  # replicates
 FL478  Control  3
 FL478  Salt  3
 IR29  Control  2
 IR29  Salt  3
 IR63731  Control  3
 IR63731  Salt  3
 Pokkali  Control  3
 Pokkali  Salt  3
Total hybridizations: 23
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE14403)

Series_summary:
Keywords: stress response

Series_overall_design:
Seedlings were cultured in sand and irrigated with a nutrient solution for 22 d (salt-treated) and 30 d (control) after germination, respectively. Salinity treatment was applied by adding NaCl and CaCl2 (5:1 molar concentration) in two steps over a period of 3 days (final electrical conductivity: 7.4 dS m-1) to prevent osmotic shock. All plants were harvested on day 30.
Publication: none
Created: 2010-02-23 13:39:13
Last Update: 2010-02-26 13:53:23
GEO Accession GSE14403
Submitter: PLEXdb Curator
Name: Ute,Baumann
Institution: University of Adelaide, Hartley Grove, Glen Osmond, SA. Australia
Head of Laboratory: --
email(s):
Homepage:

 
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