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Browse RicePLEX Experiment Data

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Transcriptome analysis of iron and phosphorus interaction in rice seedlings
Luqing,,Zheng, Colledge of Life Sciences, Zhejiang University, 388 Yuhangtanghe Road, Hangzhou, 310058, China (Luqing Zheng)
Experiment design (16 hybridizations)
organism part name
•Root •Shoot
compound1
•full_P •no_P
compound2
•full_Fe •no_Fe

This experiment has been imported by PLEXdb from NCBI GEO (GSE17245)

Series_summary:
We used Affymetrix genechip to detail the global...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Transcriptome analysis of iron and phosphorus interaction in rice seedlings
Accession No: OS31
Microarray: Rice57k
Visibility: public
Experiment Type:
Experiment Factor(s):
organism part name
•Root   •Shoot
compound1
•full_P   •no_P
compound2
•full_Fe   •no_Fe
Quality Control: biological replicates
Treatment summary:
 organism part name  compound1  compound2  # replicates
 Root  full_P  full_Fe  2
 Root  full_P  no_Fe  2
 Root  no_P  full_Fe  2
 Root  no_P  no_Fe  2
 Shoot  full_P  full_Fe  2
 Shoot  full_P  no_Fe  2
 Shoot  no_P  full_Fe  2
 Shoot  no_P  no_Fe  2
Total hybridizations: 16
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE17245)

Series_summary:
We used Affymetrix genechip to detail the global programme of gene expression underlying different Fe and P supply conditions identified distinct classes of up-regulated genes.

Series_overall_design:
The GeneChip analysis experiment was designed as a two-factor experiment with four treatments: (1) +P+Fe; (2) –Fe+P; (3) +Fe–P; (4) –Fe–P. The experiment included two biological replicates. Each sample represented root and shoot material from five to 10 plants.
Publication: 'Physiological and transcriptome analysis of iron and phosphorus interaction in rice seedlings', Zheng L, Huang F, Narsai R, Wu J, Giraud E, He F, Cheng L, Wang F, Wu P, Whelan J, Shou H
Plant Physiol. 2009 Sep;151(1):262-74. Epub 2009 Jul 15.
pubmed: 19605549
Created: 2010-03-02 11:25:58
Last Update: 2010-03-02 13:01:30
GEO Accession GSE17245
Submitter: PLEXdb Curator
Name: Luqing,,Zheng
Institution: Colledge of Life Sciences, Zhejiang University, 388 Yuhangtanghe Road, Hangzhou, 310058, China
Head of Laboratory: --
email(s):
Homepage:

 
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