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Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
Wenying,,Xu, Institute of Genetics and Developmental Biology of the Chinese Academy of Sciences, Datun Road, Chaoyang District, Beijing, 100101, China (wyxu@genetics.ac.cn)
Experiment design (4 hybridizations)
genotype
•Wild Type •pheonix

This experiment has been imported by PLEXdb from NCBI GEO (GSE17194)

Series_summary:
phoenix (pho) is a naturally occurring rice (Ory...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
Accession No: OS33
Microarray: Rice57k
Visibility: public
Experiment Type:
Experiment Factor(s):
genotype
•Wild Type   •pheonix
Quality Control:
Treatment summary:
 genotype  # replicates
 Wild Type  2
 pheonix  2
Total hybridizations: 4
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE17194)

Series_summary:
phoenix (pho) is a naturally occurring rice (Oryza sativa L.) mutant that exhibits stable inflorescence reversion. Genetic analysis showed that it was not a simple mendelian mutant. In order to find the major genes contributed to the formation of pho, microarray experiments were carried out to analyze and compare the transcriptional profiles between pho and wild-type panicles.

Series_overall_design:
We generated gene expression profiles of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) by using 57K Affymetrix rice whole genome array.
Publication: 'DEP and AFO regulate reproductive habit in rice.', Wang K, Tang D, Hong L, Xu W, Huang J, Li M, Gu M, Xue Y, Cheng Z.
PLoS Genet 2010 Jan 22;6(1):e1000818.
pubmed: 20107517
Created: 2010-03-12 13:14:07
Last Update: 2010-03-12 13:31:58
Released: 2010-03-12
GEO Accession GSE17194
Submitter: PLEXdb Curator
Name: Wenying,,Xu
Institution: Institute of Genetics and Developmental Biology of the Chinese Academy of Sciences, Datun Road, Chaoyang District, Beijing, 100101, China
Head of Laboratory: --
email(s):
Homepage:

 
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