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Browse RicePLEX Experiment Data

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Expression data from rice genotypes FL478 and IR29
Harkamal Walia, University of Nebraska, Department of Agronomy and Horticulture, Lincoln, Nebraska (hwalia@ucdavis.edu)
Experiment design (11 hybridizations)
genotype
•FL478 •IR29
stress condition
•control •salt

This experiment has been imported by PLEXdb from NCBI GEO (GSE13735) Series_summary: Salt Stress response of salt-tolerant genotype FL478 comp...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Expression data from rice genotypes FL478 and IR29
Accession No: OS41
Microarray: Rice57k
Visibility: public
Experiment Type:
Experiment Factor(s):
genotype
•FL478   •IR29
stress condition
•control   •salt
Quality Control: biological replicates
Treatment summary:
 genotype  stress condition  # replicates
 FL478  control  3
 FL478  salt  3
 IR29  control  2
 IR29  salt  3
Total hybridizations: 11
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE13735)

Series_summary:
Salt Stress response of salt-tolerant genotype FL478 compared to IR29
Rice GeneChip was used to find differential expression between two rice genotypes under control and salt stress conditions

Keywords: genotype and treatment comparison

Series_overall_design:
Roots (tips) tissue was used for hybridization to GeneChips
Publication: 'Comparing genomic expression patterns across plant species reveals highly diverged transcriptional dynamics in response to salt stress.', Walia H, Wilson C, Ismail AM, Close TJ, Cui X.
BMC Genomics 2009 Aug 25;10:398.
pubmed: 19706179
Created: 2011-03-22 12:19:48
Last Update: 2011-03-22 12:38:36
Released: 2011-03-29
GEO Accession GSE13735
Submitter: PLEXdb Curator
Name: Harkamal Walia
Institution: University of Nebraska, Department of Agronomy and Horticulture, Lincoln, Nebraska
Head of Laboratory: Harkamal Walia
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