Search   for 
Find Your Gene ·  Publications ·  Tools ·  Gene List Suite ·  Expression Atlases ·  About PLEXdb ·  Feedback
Login ID:
Password:
Plants
Arabidopsis
Barley
Brachypodium
Citrus
Cotton
Grape
Maize
Medicago
Poplar
Rice
Soybean
Sugarcane
Tomato
Wheat
Pathogens & Symbionts
Search Experiments
Download Data
Gene List Suite
Tools
Your Account
Documentation
News
Personnel
Links
 Data Release Policy 
PLEXdb is committed to making expression data publicly available to researchers world-wide...
complete policy
 

Browse RicePLEX Experiment Data

Choose an experiment:
Gene expression in leaf blades of the rice Os-LBD37 overexpressor line RK16331-13
Miyako Kusano, RIKEN, PSC, Metabolomics research group, Yokohama, Japan (mkusano005@psc.riken.jp,ksaito@psc.riken.jp)
Experiment design (6 hybridizations)
genetic line
•empty vector control •Os-LBD37 overexpressor

This experiment has been imported by PLEXdb from NCBI GEO (GSE14647) Series_summary: The 5th and 6th leaf blades of the rice Os-LBD37 overexpr...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

Show
Experiment Name: Gene expression in leaf blades of the rice Os-LBD37 overexpressor line RK16331-13
Accession No: OS47
Microarray: Rice57k
Visibility: public
Experiment Type:
Experiment Factor(s):
genetic line
•empty vector control   •Os-LBD37 overexpressor
Quality Control: biological replicates
Treatment summary:
 genetic line  # replicates
 empty vector control  3
 Os-LBD37 overexpressor  3
Total hybridizations: 6
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE14647)

Series_summary:
The 5th and 6th leaf blades of the rice Os-LBD37 overexpressor line RK16331-13 and the empty vector control line FOX3 were examined. LBD37 belongs to the plant- specific LOB- (Lateral Organ Boundary) domain family proteins first characterized in Arabidopsis. Results point towards an involvement of the rice LBD37 (OsLBD37) ortholog of Arabidopsis in nitrogen metabolism- and senescence- related processes.

Series_overall_design:
Hygromycin- resistant rice Os-LBD37 overexpressor and empty vector control plants were grown in hydroponic culture system. The sampling date of the leaf blades of RK16331-13 LBD37 overexpressor plants and the empty vector control was determined according to the emergence of the 8th leaf blade.
Three independent hybridizations were performed for line RK16331-13 and the empty vector control line.

PLEXdb Curator"s Note:
GEO mentions that this data set is part of a superseries, GSE14663. which contains samples both from Affymetrix rice and Arabidopsis platforms. Because of this reason we have not imported the superseries into PLEXdb.
Publication: none
Created: 2011-03-29 13:09:45
Last Update: 2011-03-29 13:24:44
Released: 2011-02-14
GEO Accession GSE14647
Submitter: PLEXdb Curator
Name: Miyako Kusano
Institution: RIKEN, PSC, Metabolomics research group, Yokohama, Japan
Head of Laboratory: Kazuki Saito
email(s):
Homepage:

 
Copyright@2001-2013 The PLEXdb Group
All rights reserved.

For problems with the webpages contact PLEXdb webmasters