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Browse RicePLEX Experiment Data

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Whole genome transcriptome profiling of Pusa 1266 and Pusa Basmati 1 in panicle primordia stage
Rupesh Kailasrao Deshmukh, National Research Center on Plant Biotechnology, Rice Genome Laboratory, New Delhi, India (rupdeshmukh@rediffmail.com,nksingh@nrcpb.org)
Experiment design (4 hybridizations)
cultivar
•Pusa1266 •Pusa Basmati

This experiment has been imported by PLEXdb from NCBI GEO (GSE15912) Series_summary: The aim of this study was to identify candidate genes res...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Whole genome transcriptome profiling of Pusa 1266 and Pusa Basmati 1 in panicle primordia stage
Accession No: OS49
Microarray: Rice57k
Visibility: public
Experiment Type:
Experiment Factor(s):
cultivar
•Pusa1266   •Pusa Basmati
Quality Control: biological replicates
Treatment summary:
 cultivar  # replicates
 Pusa1266  2
 Pusa Basmati  2
Total hybridizations: 4
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE15912)

Series_summary:
The aim of this study was to identify candidate genes responsible for grain number per panicle between a pair of rice varieties (Pusa 1266 and Pusa Basmati 1) by combining QTL analysis with expression analysis. Microarray analysis of RNA extracted from the panicle primordia showed 2741 differentially expressed genes. The differentially expressed genes were shortened to 18 on the basis of their occurance in the QTL region (responsible for grain number regulation) detected in RIL population derived from Pusa 1266 and Pusa Basmati 1.

Series_overall_design:
RNA from the stage '0' panicle primordia of Pusa 1266 and Pusa Basmati 1 were analysed in two different biological replications (A and B) making total four samples
Publication: 'Identification of candidate genes for grain number in rice (Oryza sativa L.).', Deshmukh R, Singh A, Jain N, Anand S, Gacche R, Singh A, Gaikwad K, Sharma T, Mohapatra T, Singh N.
Funct Integr Genomics 2010 Aug;10(3):339-47.
pubmed: 20376514
Created: 2011-03-31 12:03:03
Last Update: 2011-03-31 12:17:26
Released: 2011-02-14
GEO Accession GSE15912
Submitter: PLEXdb Curator
Name: Rupesh Kailasrao Deshmukh
Institution: National Research Center on Plant Biotechnology, Rice Genome Laboratory, New Delhi, India
Head of Laboratory: Nagendra Singh
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