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Browse RicePLEX Experiment Data

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Expression data from rice seedlings of wild type and the CHR729 mutant
Yongfeng Hu, IBP, Paris, France (feng2602@sina.com,dao-xiu.zhou@u-psud.fr)
Experiment design (6 hybridizations)
genotype
•CHR729 T-DNA mutant •wild type

This experiment has been imported by PLEXdb from NCBI GEO (GSE25073) Series_summary: In order to study the function of CHR729 in rice, the T-D...[complete overview]

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Experiment Name: Expression data from rice seedlings of wild type and the CHR729 mutant
Accession No: OS58
Microarray: Rice57k
Visibility: public
Experiment Type:
Experiment Factor(s):
genotype
•CHR729 T-DNA mutant   •wild type
Quality Control: biological replicates
Treatment summary:
 genotype  # replicates
 CHR729 T-DNA mutant  3
 wild type  3
Total hybridizations: 6
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE25073)

Series_summary:
In order to study the function of CHR729 in rice, the T-DNA insertion mutant of CHR729 was obtained and analysed.

Series_overall_design:
Total RNAs were extracted from 11-day-old seedlings of both wild type (Hwayoung) and CHR729 mutant plants. Affymetrix GeneChip® Rice Genome Array hybridization was performed with three biological replicates. Data was analyzed with SAM Excel add-in and in-house perl scripts. Results showed that 254 genes are up-regulated, and 345 genes are down-regulated (with q – value at 5%).
Publication: none
Created: 2011-04-01 16:27:45
Last Update: 2011-04-08 12:39:27
Released: 2011-04-27
GEO Accession GSE25073
Submitter: PLEXdb Curator
Name: Yongfeng Hu
Institution: IBP, Paris, France
Head of Laboratory: Dao-Xiu Zhou
email(s):
Homepage:

 
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