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Browse RicePLEX Experiment Data

Choose an experiment:
DNA microarray data from transgenic rice KMD and its parent XS11
Zhi Liu, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China (liuzhi7667@hotmail.com)
Experiment design (6 hybridizations)
genotype
•KMD •XS11

This experiment has been imported by PLEXdb from NCBI GEO (GSE33203)

Series_summary:
KMD is genetically engenered to be highly resist...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: DNA microarray data from transgenic rice KMD and its parent XS11
Accession No: OS74
Microarray: Rice57k
Visibility: public
Experiment Type:
Experiment Factor(s):
genotype
•KMD   •XS11
Quality Control: biological replicates
Treatment summary:
 genotype  # replicates
 KMD  3
 XS11  3
Total hybridizations: 6
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE33203)

Series_summary:
KMD is genetically engenered to be highly resistant to lepidopteran pests through expressing a synthetic cry1Ab gene and its parent non-transgenic rice is Xiushui 11 (XS11). Many unintended effects have been discovered in KMD. We used microarrays to study the molecular basis for unintended effects of KMD rice.

Series_overall_design:
Samples were collected from both KMD and XS11 for RNA extraction and hybridization on Affymetrix microarrays. We selected differentially expressed genes hoping to clarify the molecular basis for unintended effects in KMD.
Publication: none
Created: 2011-11-22 09:51:37
Last Update: 2011-11-22 12:38:04
Released: 2011-11-22
GEO Accession GSE33203
Submitter: PLEXdb Curator
Name: Zhi Liu
Institution: Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
Head of Laboratory: Zhi Liu
email(s):
Homepage:

 
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