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Browse RicePLEX Experiment Data

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Expression data from rice varieties IRAT109 and ZS97 for drought stress treatment in flag leaves
Ding Xi Peng, Huazhong Agricultural University, Department of National Key Laboratory of Crop Genetic Improvement, Wuhan, China (dingxipeng@webmail.hzau.edu.cn)
Experiment design (16 hybridizations)
genotype
•IRAT109 •ZS97
treatment
•no stress •slight •moderate •severe

This experiment has been imported by PLEXdb from NCBI GEO (GSE25176)

Series_summary:
Comparative transcriptional profiling of two con...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Expression data from rice varieties IRAT109 and ZS97 for drought stress treatment in flag leaves
Accession No: OS77
Microarray: Rice57k
Visibility: public
Experiment Type:
Experiment Factor(s):
genotype
•IRAT109   •ZS97
treatment
•no stress   •slight   •moderate   •severe
Quality Control: biological replicates
Treatment summary:
 genotype  treatment  # replicates
 IRAT109  no stress  2
 IRAT109  slight  2
 IRAT109  moderate  2
 IRAT109  severe  2
 ZS97  no stress  2
 ZS97  slight  2
 ZS97  moderate  2
 ZS97  severe  2
Total hybridizations: 16
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE25176)

Series_summary:
Comparative transcriptional profiling of two contrasting rice genotypes,IRAT109 (drought-resistant japonica cultivar) and ZS97 (drought-sensitive indica cultivar), under drought stress during the reproductive stage

Series_overall_design:
Four samples with RWC in the range of 94–95% (no stress, D0), 83–88% (slight drought in which leaves were slightly rolled, D1), 74–78% (moderate drought in which about half of each leaf was rolled, D2), and 65–69% (severe drought in which all leaves were completely rolled, D3) were collected for expression profiling analysis using an Affymetrix GeneChip.
Publication: none
Created: 2011-12-08 11:53:19
Last Update: 2011-12-13 12:39:33
Released: 2011-12-13
GEO Accession GSE25176
Submitter: PLEXdb Curator
Name: Ding Xi Peng
Institution: Huazhong Agricultural University, Department of National Key Laboratory of Crop Genetic Improvement, Wuhan, China
Head of Laboratory: --
email(s):
Homepage:

 
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