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Browse RicePLEX Experiment Data

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Expression data from transgenic rice with anti-OsPDCD5
Mengfei Yang, Fudan university, Shanghai, China (banmatus@gmail.com)
Experiment design (6 hybridizations)
genetic line
•nontransgenic •transgenic
treatment
•normal (No NaCl) •20mins NaCl •3 hrs NaCl

This experiment has been imported by PLEXdb from NCBI GEO (GSE28209)

Series_summary:
Environmental stresses influence the growth of p...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Expression data from transgenic rice with anti-OsPDCD5
Accession No: OS78
Microarray: Rice57k
Visibility: public
Experiment Type:
Experiment Factor(s):
genetic line
•nontransgenic   •transgenic
treatment
•normal (No NaCl)   •20mins NaCl   •3 hrs NaCl
Quality Control: biological replicates
Treatment summary:
 genetic line  treatment  # replicates
 nontransgenic  normal (No NaCl)  1
 nontransgenic  20mins NaCl  1
 nontransgenic  3 hrs NaCl  1
 transgenic  normal (No NaCl)  1
 transgenic  20mins NaCl  1
 transgenic  3 hrs NaCl  1
Total hybridizations: 6
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE28209)

Series_summary:
Environmental stresses influence the growth of plants and the productivity of crops. Salinity is one of the most important abiotic stresses for agricultural crops. PCD is induced by various biotic and abiotic stresses in algae and higher plants, including high salinity treatment. OsPDCD5, an ortholog to mammalian-programmed cell death 5, is up-regulated under low temperature and NaCl treatments.
We found that the transgenic rice which constitutively expressed anti-OsPDCD5 increased salt stress tolerance in unique ways. By using the Rice Genome Microarray, we identified target genes that were regulated in transgenic rice plants by anti-OsPDCD5.

Series_overall_design:
Leaf tissues of 2-week-old transgenic and nontransgenic seedlings (10 plants each) before 200mM NaCl treatment, 20mins and 3 hours after 200mM NaCl treatment, respectively, were selected.
Publication: none
Created: 2011-12-14 11:33:39
Last Update: 2011-12-14 13:22:01
Released: 2011-12-14
GEO Accession GSE28209
Submitter: PLEXdb Curator
Name: Mengfei Yang
Institution: Fudan university, Shanghai, China
Head of Laboratory: --
email(s):
Homepage:

 
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