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Browse RicePLEX Experiment Data

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Expression profile of high yielding rice introgression line
Sarla Neelamraju, Directorate of Rice Research, Department of Crop Improvement Section, Hyderabad, India (nsarla@drricar.org,sarla_neelamraju@yahoo.com)
Experiment design (12 hybridizations)
genetic line
•KMR3 •IL50-7
developmental stage name
•flag leaf •panicle

This experiment has been imported by PLEXdb from NCBI GEO (GSE30487)

Series_summary:
Leaves and panicles from recurrent parent KMR3 a...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Expression profile of high yielding rice introgression line
Accession No: OS83
Microarray: Rice57k
Visibility: public
Experiment Type:
Experiment Factor(s):
genetic line
•KMR3   •IL50-7
developmental stage name
•flag leaf   •panicle
Quality Control: biological replicates
Treatment summary:
 genetic line  developmental stage name  # replicates
 KMR3  flag leaf  3
 KMR3  panicle  3
 IL50-7  flag leaf  3
 IL50-7  panicle  3
Total hybridizations: 12
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE30487)

Series_summary:
Leaves and panicles from recurrent parent KMR3 and a high yielding KMR3-O.rufipogon introgression line were used
Microarray analysis was carried out to reveal up- and down-regulated DEGs in leaves and panicles of control and experimental line for identifying key genes that help improve yield

Series_overall_design:
Leaves and fully emerged young panicles from both lines were used for RNA extraction and hybridization on Affymetrix microarrays
Publication: none
Created: 2012-02-23 11:55:51
Last Update: 2012-03-15 12:50:34
Released: 2012-03-15
GEO Accession GSE30487
Submitter: PLEXdb Curator
Name: Sarla Neelamraju
Institution: Directorate of Rice Research, Department of Crop Improvement Section, Hyderabad, India
Head of Laboratory: Sarla Neelamraju
email(s):
Homepage:

 
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