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Browse RicePLEX Experiment Data

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Expression data from rice embryo and endosperm development
Hong-Wei Xue, Institute of Plant Physiology and Ecology,Shanghai Institutes for Biological Sciences, Shanghai, China (hwxue@sibs.ac.cn)
Experiment design (14 hybridizations)
tissue type name
•ovary •embryo •endosperm
developmental stage name
•0 DAF •3 DAF •9 DAF •12 DAF •16 DAF

This experiment has been imported by PLEXdb from NCBI GEO (GSE27856)

Series_summary:
The receptor-like kinases (RLKs) plays critical ...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Expression data from rice embryo and endosperm development
Accession No: OS89
Microarray: Rice57k
Visibility: public
Experiment Type:
Experiment Factor(s):
tissue type name
•ovary   •embryo   •endosperm
developmental stage name
•0 DAF   •3 DAF   •9 DAF   •12 DAF   •16 DAF
Quality Control: biological replicates
Treatment summary:
 tissue type name  developmental stage name  # replicates
 ovary  0 DAF  2
 ovary  3 DAF  0
 ovary  9 DAF  0
 ovary  12 DAF  0
 ovary  16 DAF  0
 embryo  0 DAF  0
 embryo  3 DAF  2
 embryo  9 DAF  2
 embryo  12 DAF  2
 embryo  16 DAF  0
 endosperm  0 DAF  0
 endosperm  3 DAF  2
 endosperm  9 DAF  2
 endosperm  12 DAF  0
 endosperm  16 DAF  2
Total hybridizations: 14
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE27856)

Series_summary:
The receptor-like kinases (RLKs) plays critical roles in signal transduction through sensing the extracellular signals and activating the downstream signal transduction by phosphorylating their targets. Up to now, there are only a few RLKs have been functionally identified.
In this study, we systemically analyzed the expression pattern of rice genes, especially the RLK coding genes during embryo and endosperm development.

Series_overall_design:
Rice Ovary and three development stages of embryo and endosperm (embryo 3, 9, 12 DAF; Endosperm 3, 9, 16 DAF) were analyzed, all of them were biologically repeated two times.
Publication: 'Global analysis of expression profiles of rice receptor-like kinase genes.', Gao LL, Xue HW.
Mol Plant 2012 Jan;5(1):143-53.
pubmed: 21765177
Created: 2012-04-20 09:14:47
Last Update: 2012-04-24 14:25:32
Released: 2012-04-26
GEO Accession GSE27856
Submitter: PLEXdb Curator
Name: Hong-Wei Xue
Institution: Institute of Plant Physiology and Ecology,Shanghai Institutes for Biological Sciences, Shanghai, China
Head of Laboratory: Hong-Wei Xue
email(s):
Homepage:

 
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