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Browse RicePLEX Experiment Data

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Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
Xiaoting, Zhang, Fujian Agriculture and Forestry University, Fuzhou, China (zhangxiaoting921@163.com)
Experiment design (12 hybridizations)
genotype
•WuYun3 •KT95-418
disease type
•RSV-infected •non-infected

This experiment has been imported from NCBI GEO(GSE11025). Series_Summary During the pathogenesis of virus disease, lots of changes occur in p...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
Accession No: OS9
Microarray: Rice57k
Visibility: public
Experiment Type:
Experiment Factor(s):
genotype
•WuYun3   •KT95-418
disease type
•RSV-infected   •non-infected
Quality Control: biological replicates
Treatment summary:
 genotype  disease type  # replicates
 WuYun3  RSV-infected  3
 WuYun3  non-infected  3
 KT95-418  RSV-infected  3
 KT95-418  non-infected  3
Total hybridizations: 12
Description: This experiment has been imported from NCBI GEO(GSE11025).

Series_Summary
During the pathogenesis of virus disease, lots of changes occur in plant hosts including the altered gene expression profiles. Rice stripe virus (RSV) is the type member of Tenuivirus, transmitted by Laodelphax striatellus in a circulative propagative man
To investigate the molecular differences in two japonica rice genotypes WuYun3 and KT95-418 in response to RSV infection, Affymetrix rice genome array were used to analyze and compare their transcriptional profiles.

Keywords: disease state analysis

Series_overall_design
Nine-day old 20 rice seedlings were exposed to approximately 100 viruliferous small brown planthoppers (Laodelphax striatellus Fall) for two days to be innoculated by RSV. Then they were transplanted in insect-free greenhouse at 25┬▒3C with a daily photope
Publication: none
Created: 2009-04-13 15:23:27
Last Update: 2009-04-13 16:19:02
GEO Accession GSE11025
Submitter: PLEXdb Curator
Name: Xiaoting, Zhang
Institution: Fujian Agriculture and Forestry University, Fuzhou, China
Head of Laboratory: --
email(s):
Homepage:

 
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