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Browse RicePLEX Experiment Data

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Comparative Transcriptomes Profiling of Photoperiod-sensitive Male Sterile Rice Nongken 58S between Short Day and Long Day Condition
Wei Wang, Wuhan Universtiy, Wuhan, China (rego_wang@whu.edu.cn)
Experiment design (12 hybridizations)
photoperiod
•LD •SD
developmental stage name
•pistil/stamen •glume pds

This experiment has been imported by PLEXdb from NCBI GEO (GSE29820)

Series_summary:
Nongken 58S is photoperiod-sensitive genic male s...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Comparative Transcriptomes Profiling of Photoperiod-sensitive Male Sterile Rice Nongken 58S between Short Day and Long Day Condition
Accession No: OS99
Microarray: Rice57k
Visibility: public
Experiment Type:
Experiment Factor(s):
photoperiod
•LD   •SD
developmental stage name
•pistil/stamen   •glume pds
Quality Control: biological replicates
Treatment summary:
 photoperiod  developmental stage name  # replicates
 LD  pistil/stamen  3
 LD  glume pds  3
 SD  pistil/stamen  3
 SD  glume pds  3
Total hybridizations: 12
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE29820)

Series_summary:
Nongken 58S is photoperiod-sensitive genic male sterile (PGMS) rice. Its pollens are fully sterile when it is treated with LD condition from glume primordium differentiation stage to pistil/stamen primordium forming stage, and its pollens are fertile when treated with SD condition during these stages.
We used microarrays to detail the global programme of leaf gene expression under LD and SD condition for investigating the transcriptomes in the male sterility transition in PGMS rice to find out the genes related to this transition

Series_overall_design:
We compared the transcriptomes of Nongken 58S under shortday (SD) and longday (LD) at the glume primordium differentiation stage and pistil/stamen primordium forming stage, respectively. 12 samples were analyzed, and each treatment had biological triplicates.
Supplementary files: SD vs LD during the glume primordium differentiation stage and the pistil/stamen primordium forming stage.

PLEXdb Curator's Note:
At PLEXdb:
pistil/stamen pfs = pistil/stamen primordium forming stage
glume pds = glume primordium differentiation stage

At GEO:
P-SLD= Longday, pistil/stamen primordium forming stage
P-SSD= Shortday, pistil/stamen primordium forming stage
G-SLD= Longday, glume primordium differentiation stage
G-SSD= Shortday, glume primordium differentiation stage
Publication: none
Created: 2012-09-17 15:28:27
Last Update: 2012-09-17 20:38:26
Released: 2012-09-24
GEO Accession GSE29820
Submitter: PLEXdb Curator
Name: Wei Wang
Institution: Wuhan Universtiy, Wuhan, China
Head of Laboratory: --
email(s):
Homepage:

 
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