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Time-course leaf expression data from Populus deltoides
Joshua Adams, Mississippi State University, Department of Forestry, Mississippi State, Mississippi (jpa18@msstate.edu)
Experiment design (24 hybridizations)
time
•Feb05(pre-formed) •Mar05(pre-formed) •Sep05(pre-formed) •Dec05(pre-formed) •Mar06(pre-formed) •Apr06(mature) •May06(mature) •Jun06(mature)

This experiment has been imported by PLEXdb from NCBI GEO (GSE24349)

Series_summary:
We conducted micro-array analysis to quantify th...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Time-course leaf expression data from Populus deltoides
Accession No: PT29
Microarray: Poplar61k
Visibility: public
Experiment Type:
Experiment Factor(s):
time
•Feb05(pre-formed)   •Mar05(pre-formed)   •Sep05(pre-formed)   •Dec05(pre-formed)   •Mar06(pre-formed)   •Apr06(mature)   •May06(mature)   •Jun06(mature)
Quality Control: biological replicates
Treatment summary:
 time  # replicates
 Feb05(pre-formed)  3
 Mar05(pre-formed)  3
 Sep05(pre-formed)  3
 Dec05(pre-formed)  3
 Mar06(pre-formed)  3
 Apr06(mature)  3
 May06(mature)  3
 Jun06(mature)  3
Total hybridizations: 24
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE24349)

Series_summary:
We conducted micro-array analysis to quantify the global transcriptome variations in leaves through the course of the year allowing for identification of changing developmental signals. We used RNA samples from pre-formed and mature leaves in the upper crown of a sexually mature Populus deltoides tree 2 hours after sunrise.

Series_overall_design:
Three independent samples of leaf/pre-formed leaf tissues were collected from the upper crown of a single sexually mature tree. RNA was extracted from tissues and hybridized on Affymetrix Genechip Poplar Genome Array. Tissues represented two batches (batch 1 from 2005 and batch 2 from 2006). Therefore, March samples were used to normalize the other month samples within the same batch.
Publication: none
Created: 2011-07-29 09:30:05
Last Update: 2011-07-29 13:25:13
Released: 2011-07-29
GEO Accession GSE24349
Submitter: PLEXdb Curator
Name: Joshua Adams
Institution: Mississippi State University, Department of Forestry, Mississippi State, Mississippi
Head of Laboratory: Cetin Yuceer
email(s):
Homepage:

 
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