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Browse PoplarPLEX Experiment Data

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Effect of hypoxia on gene expression in Grey poplar
Juergen,,Kreuzwieser, University of Freiburg, Freiburg, Germany (juergen.kreuzwieser@ctp.uni-freiburg.de)
Experiment design (30 hybridizations)
time
•0 hrs •5 hrs •24 hrs •168 hrs
organism part name
•leaf •root
treatment
•control •flooded

This experiment has been imported by PLEXdb from NCBI GEO (GSE13109)

Series_summary:
The molecular responses of Grey poplar (Populus ...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Effect of hypoxia on gene expression in Grey poplar
Accession No: PT4
Microarray: Poplar61k
Visibility: public
Experiment Type:
Experiment Factor(s):
time
•0 hrs  •5 hrs  •24 hrs  •168 hrs
organism part name
•leaf   •root
treatment
•control   •flooded
Quality Control: biological replicates
Treatment summary:
 time  organism part name  treatment  # replicates
 0 hrs  leaf  control  3
 0 hrs  leaf  flooded  0
 0 hrs  root  control  3
 0 hrs  root  flooded  0
 5 hrs  leaf  control  0
 5 hrs  leaf  flooded  0
 5 hrs  root  control  3
 5 hrs  root  flooded  3
 24 hrs  leaf  control  0
 24 hrs  leaf  flooded  0
 24 hrs  root  control  3
 24 hrs  root  flooded  3
 168 hrs  leaf  control  3
 168 hrs  leaf  flooded  3
 168 hrs  root  control  3
 168 hrs  root  flooded  3
Total hybridizations: 30
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE13109)

Series_summary:
The molecular responses of Grey poplar (Populus x canescens) following root hypoxia were studied in roots and leaves using transcript profiling. Grey poplar is a flooding tolerant tree species and analysis of the molecular response to hypoxia may indicate possible adaptation mechanisms to this stress.

Series_overall_design:
The root system of the poplar trees were flooded for up to 168 h. At three time-points (5 h, 24 h, 168 h) plants were collected and leaf and root tissue analysed separately. At each time-point non-flooded controls were collected and analysed as well.
Publication: none
Created: 2009-07-08 10:26:38
Last Update: 2009-07-08 10:58:12
GEO Accession GSE13109
Submitter: PLEXdb Curator
Name: Juergen,,Kreuzwieser
Institution: University of Freiburg, Freiburg, Germany
Head of Laboratory: --
email(s):
Homepage:

 
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