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Browse PoplarPLEX Experiment Data

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Transcript expression data from Populus euphratica leaves subjected to infection by Marssonina pathogen
Dong-hui Yan, Chinese Academy of Forestry, Haidian, China (yandh@caf.ac.cn)
Experiment design (6 hybridizations)
time
•0 dai •2 dai •7 dai

This experiment has been imported by PLEXdb from NCBI GEO (GSE23726)

Series_summary:
Gene expression profiles of Populus deltoides in...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Transcript expression data from Populus euphratica leaves subjected to infection by Marssonina pathogen
Accession No: PT47
Microarray: Poplar61k
Visibility: public
Experiment Type:
Experiment Factor(s):
time
•0 dai   •2 dai   •7 dai
Quality Control: biological replicates
Treatment summary:
 time  # replicates
 0 dai  2
 2 dai  2
 7 dai  2
Total hybridizations: 6
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE23726)

Series_summary:
Gene expression profiles of Populus deltoides induced by fungal pathogenic Marssonina brunneain iduring time-course infection.
We used Affymetrix poplar genome genechip microarrays to analyze the full transcript expression underlying time-course infection and identified significantly differently expressed genes during the infection process.

Series_overall_design:
2-year-old seedlings of P. deltoides grown were innoculated with the suspension of the pathogenic spores throught leaves spraying. Collecting the samples at interval time of 2 days and one week. Affymetrix poplar genechip was hired to investigate the full transcripts changed of the poplar response to the pathogen attack during the time.

PLEXdb Curator Notes:
Key for GEO Samples:
lky-a= 0 days
lky-b= 2 days
lky-c= 7 days
Publication: none
Created: 2012-08-29 16:18:11
Last Update: 2012-09-10 14:23:13
Released: 2012-09-10
GEO Accession GSE23726
Submitter: PLEXdb Curator
Name: Dong-hui Yan
Institution: Chinese Academy of Forestry, Haidian, China
Head of Laboratory: --
email(s):
Homepage:

 
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