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Browse WheatPLEX Experiment Data

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Transcriptome profiling and expression analyses of genes critical to wheat adaptation to low temperature
Debbie Laudencia-Chingcuanco, Western Regional Research Center, Department of Genomics and Gene Discovery Research Unit, Albany, California (debbie.laudencia@ars.usda.gov)
Experiment design (96 hybridizations)
genotype
•Winter Manitou (12W) •Spring Northstar (8S) •Spring Manitou (Ma) •Winter Northstar (No)
time
•0 days •2 days •14 days •21 days •35 days •42 days •56 days •70 days

This experiment has been imported by PLEXdb from NCBI GEO (GSE23889)

Series_summary:
Understanding the mechanism of low temperature (...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Transcriptome profiling and expression analyses of genes critical to wheat adaptation to low temperature
Accession No: TA42
Microarray: Wheat
Visibility: public
Experiment Type:
Experiment Factor(s):
genotype
•Winter Manitou (12W)   •Spring Northstar (8S)   •Spring Manitou (Ma)   •Winter Northstar (No)
time
•0 days  •2 days  •14 days  •21 days  •35 days  •42 days  •56 days  •70 days
Quality Control: biological replicates
Treatment summary:
 genotype  time  # replicates
 Winter Manitou (12W)  0 days  3
 Winter Manitou (12W)  2 days  3
 Winter Manitou (12W)  14 days  3
 Winter Manitou (12W)  21 days  3
 Winter Manitou (12W)  35 days  3
 Winter Manitou (12W)  42 days  3
 Winter Manitou (12W)  56 days  3
 Winter Manitou (12W)  70 days  3
 Spring Northstar (8S)  0 days  3
 Spring Northstar (8S)  2 days  3
 Spring Northstar (8S)  14 days  3
 Spring Northstar (8S)  21 days  3
 Spring Northstar (8S)  35 days  3
 Spring Northstar (8S)  42 days  3
 Spring Northstar (8S)  56 days  3
 Spring Northstar (8S)  70 days  3
 Spring Manitou (Ma)  0 days  3
 Spring Manitou (Ma)  2 days  3
 Spring Manitou (Ma)  14 days  3
 Spring Manitou (Ma)  21 days  3
 Spring Manitou (Ma)  35 days  3
 Spring Manitou (Ma)  42 days  3
 Spring Manitou (Ma)  56 days  3
 Spring Manitou (Ma)  70 days  3
 Winter Northstar (No)  0 days  3
 Winter Northstar (No)  2 days  3
 Winter Northstar (No)  14 days  3
 Winter Northstar (No)  21 days  3
 Winter Northstar (No)  35 days  3
 Winter Northstar (No)  42 days  3
 Winter Northstar (No)  56 days  3
 Winter Northstar (No)  70 days  3
Total hybridizations: 96
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE23889)

Series_summary:
Understanding the mechanism of low temperature (LT) adaptation is crucial to the development of cold-tolerant crops. To identify the genes involved in the development of LT tolerance in the crown of hexaploid wheat we examined the global changes in genes expression during cold-treatment using the Affymetrix Wheat Genome Chip.

Series_overall_design:
Time-series experiment with 4 genotypes x 8 time-points X 3 biological replicates in random block design; 96 hybridizations
Publication: 'Genome-wide gene expression analysis supports a developmental model of low temperature tolerance gene regulation in wheat (Triticum aestivum L.).', Laudencia-Chingcuanco D, Ganeshan S, You F, Fowler B, Chibbar R, Anderson O.
BMC Genomics 2011 Jun 7;12:299.
pubmed: 21649926
Created: 2011-11-15 10:37:11
Last Update: 2011-11-17 17:21:01
Released: 2011-11-17
GEO Accession GSE23889
Submitter: PLEXdb Curator
Name: Debbie Laudencia-Chingcuanco
Institution: Western Regional Research Center, Department of Genomics and Gene Discovery Research Unit, Albany, California
Head of Laboratory: Debbie Laudencia-Chingcuanco
email(s):
Homepage:

 
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