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Pinot Noir berry transcriptome during ripening.
Stefania Pilati, IASMA Research Center - Italy (stefania.pilati@iasma.it)
Experiment design (27 hybridizations)
year
•2003 •2005 •2006
developmental stage
•UD:0000034 33E-L, •UD:0000035 34E-L, •UD:0000037 36E-L,

Global gene expression analysis of grapevine cv. Pinot Noir berries during development and ripening. Time-course comparison of samples collected at...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Pinot Noir berry transcriptome during ripening.
Accession No: VV11
Microarray: Grape
Visibility: public
Experiment Type:
Experiment Factor(s):
year
•2003   •2005   •2006
developmental stage
•UD:0000034 33E-L,   •UD:0000035 34E-L,   •UD:0000037 36E-L,
Quality Control: biological replicates
Treatment summary:
 year  developmental stage  # replicates
 2003  UD:0000034 33E-L,  3
 2003  UD:0000035 34E-L,  3
 2003  UD:0000037 36E-L,  3
 2005  UD:0000034 33E-L,  3
 2005  UD:0000035 34E-L,  3
 2005  UD:0000037 36E-L,  3
 2006  UD:0000034 33E-L,  3
 2006  UD:0000035 34E-L,  3
 2006  UD:0000037 36E-L,  3
Total hybridizations: 27
Description: Global gene expression analysis of grapevine cv. Pinot Noir berries during development and ripening. Time-course comparison of samples collected at three developmental stages (stages 33, 34 and 36 according to the modified E-L system, ref: Coombe BG, Aust J Grape Wine Res 1995, 1: 104-110) during three seasons (2003, 2005 and 2006).

Data for each of the three seasons were normalized independently within each season, using gcRMA.


Submitted at NCBI GEO via PLEXdb.

Publication: 'Genome-wide transcriptional analysis of grapevine berry ripening reveals a set of genes similarly modulated during three seasons and the occurrence of an oxidative burst at veraison.', Stefania Pilati, Michele Perazzolli, Andrea Malossini, Alessandro Cestaro, Lorenzo Dematte, Paolo Fontana, Antonio Dal Ri, Roberto Viola, Riccardo Velasco, Claudio Moser.
BMC Genomics 8 (1), 428 (2007).
pubmed: 18034875
Created: 2007-12-20 05:35:09
Last Update: 2008-01-28 05:18:49
GEO Accession GSE31674
Submitter: Stefania Pilati
Name: Stefania Pilati
Institution: IASMA Research Center - Italy
Head of Laboratory: Claudio Moser
email(s):
Homepage:

 
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