Search   for 
Find Your Gene ·  Publications ·  Tools ·  Gene List Suite ·  Expression Atlases ·  About PLEXdb ·  Feedback
Login ID:
Password:
Plants
Arabidopsis
Barley
Brachypodium
Citrus
Cotton
Grape
Maize
Medicago
Poplar
Rice
Soybean
Sugarcane
Tomato
Wheat
Pathogens & Symbionts
Search Experiments
Download Data
Gene List Suite
Tools
Your Account
Documentation
News
Personnel
Links
 Data Release Policy 
PLEXdb is committed to making expression data publicly available to researchers world-wide...
complete policy
 

Browse MaizePLEX Experiment Data

Choose an experiment:
Understanding the Diversity of Maize Cell Wall (affy_cellwall_maize)
Stephanie Huguet, Unité de Recherche en Génomique Végétale (URGV), UMR INRA 1165-CNRS 8114-UEVE, Evry Cedex, France (huguet@evry.inra.fr,pichon@smcv.ups-tlse.fr)
Experiment design (10 hybridizations)
genetic line
•F7025(ge1bl) •F7033(ge2bl) •F98902(ge3bl) •F2(ge4bl) •Cm484(ge5bl)

This experiment has been imported by PLEXdb from NCBI GEO (GSE24624) Series_summary: affy_cellwall_maize - affy_cellwall_maize - Maize, Zea ma...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

Show
Experiment Name: Understanding the Diversity of Maize Cell Wall (affy_cellwall_maize)
Accession No: ZM36
Microarray: maize18k
Visibility: public
Experiment Type:
Experiment Factor(s):
genetic line
•F7025(ge1bl)   •F7033(ge2bl)   •F98902(ge3bl)   •F2(ge4bl)   •Cm484(ge5bl)
Quality Control: biological replicates
Treatment summary:
 genetic line  # replicates
 F7025(ge1bl)  2
 F7033(ge2bl)  2
 F98902(ge3bl)  2
 F2(ge4bl)  2
 Cm484(ge5bl)  2
Total hybridizations: 10
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE24624)

Series_summary:
affy_cellwall_maize - affy_cellwall_maize - Maize, Zea mays, is one of the most widely grown crops in the world as it provides cereal grain for human purposes and feedstock for cattle. Maize is increasingly used as a biomass fuel, such as ethanol. Studies have shown that maize stem is made up of different lignified cell types: epidermis, sclerenchyma (a few layers under the epidermis and surrounding vascular bundles in the rind), parenchyma (mostly lignified near the epidermis). One of the aims of this work is to find out if it is the proportion of these different cell types or their number (especially for vascular bundles) which influences the degree of digestibility of maize lines. For that the objective of our work is to develop a genomic strategic approach allowing an improvement of traits involved in cell wall degradability. The work will include the mapping of genes considered as strategic in the cell wall biosynthesis, the search of new genes of interest through bio-analysis, the functional analysis of genes suspected to be of importance in cell wall pathway, the search of candidate underlying QTL, and transcriptomic approaches in order to find genes co-regulation, transcription.-Comparison of internodes from 5 maize lines grown in field conditions

Series_overall_design:
10 arrays - maize; organ comparison
Publication: none
Created: 2011-03-04 11:50:04
Last Update: 2011-03-04 12:19:23
Released: 2011-03-10
GEO Accession GSE24624
Submitter: PLEXdb Curator
Name: Stephanie Huguet
Institution: Unité de Recherche en Génomique Végétale (URGV), UMR INRA 1165-CNRS 8114-UEVE, Evry Cedex, France
Head of Laboratory: Magalie Pichon
email(s):
Homepage:

 
Copyright@2001-2013 The PLEXdb Group
All rights reserved.

For problems with the webpages contact PLEXdb webmasters