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Browse MaizePLEX Experiment Data

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Expression data from Maize leaves post inoculation of Sporisorium reilianum.
Tao Yu, Northeast Agricultural University, Harbin, China (yutaoweiwei@163.com)
Experiment design (20 hybridizations)
genetic line
•L282 •L43 •Huangzao4 •Q319
time
•O days •1 days •2 days •4 days •7 days

This experiment has been imported by PLEXdb from NCBI GEO (GSE40052)

Series_summary:
Head smut of maize, which is caused by the Spori...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: Expression data from Maize leaves post inoculation of Sporisorium reilianum.
Accession No: ZM58
Microarray: maize18k
Visibility: public
Experiment Type:
Experiment Factor(s):
genetic line
•L282   •L43   •Huangzao4   •Q319
time
•O days  •1 days  •2 days  •4 days  •7 days
Quality Control: biological replicates
Treatment summary:
 genetic line  time  # replicates
 L282  O days  1
 L282  1 days  1
 L282  2 days  1
 L282  4 days  1
 L282  7 days  1
 L43  O days  1
 L43  1 days  1
 L43  2 days  1
 L43  4 days  1
 L43  7 days  1
 Huangzao4  O days  1
 Huangzao4  1 days  1
 Huangzao4  2 days  1
 Huangzao4  4 days  1
 Huangzao4  7 days  1
 Q319  O days  1
 Q319  1 days  1
 Q319  2 days  1
 Q319  4 days  1
 Q319  7 days  1
Total hybridizations: 20
Description: This experiment has been imported by PLEXdb from NCBI GEO (GSE40052)

Series_summary:
Head smut of maize, which is caused by the Sporisorium reilianum f. sp. Zeae (Kühn), has been a serious disease in maize. In order to find head smut resistant candidate genes, microarrays were used to monitor the gene expression profiles between disease resistant near isogenic lines (NIL) L282 and L43, highly resistant inbred line Q319 and highly susceptible inbred line Huangzao4 after 0 to7 days post inoculation of S.reiliana by artificial inoculation method.

Series_overall_design:
Maize leaves were selected at 0d, 1d, 2d, 4d, 7d post inoculation for RNA extraction and hybridization on Affymetrix microarrays. We sought to obtain different expression genes of different varieties at each inoculation stage in order to find head smut resistant candidate genes.
Publication: none
Created: 2012-10-16 11:22:42
Last Update: 2012-10-16 12:20:37
Released: 2012-10-16
GEO Accession GSE40052
Submitter: PLEXdb Curator
Name: Tao Yu
Institution: Northeast Agricultural University, Harbin, China
Head of Laboratory: --
email(s):
Homepage:

 
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