Search   for 
Find Your Gene ·  Publications ·  Tools ·  Gene List Suite ·  Expression Atlases ·  About PLEXdb ·  Feedback
Login ID:
Password:
Plants
Arabidopsis
Barley
Brachypodium
Citrus
Cotton
Grape
Maize
Medicago
Poplar
Rice
Soybean
Sugarcane
Tomato
Wheat
Pathogens & Symbionts
Search Experiments
Download Data
Gene List Suite
Tools
Your Account
Documentation
News
Personnel
Links
 Data Release Policy 
PLEXdb is committed to making expression data publicly available to researchers world-wide...
complete policy
 

Browse BarleyBase Experiment Data

Choose an experiment:
Transcription patterns during barley development
Arnis Druka, Scottish (adruka@scri.sari.ac.uk)
Experiment design (63 hybridizations)
genotype
•Morex •Golden Promise
tissue type
•germinating seed, coleoptyle •germinating seed, radicle •germinating seed, embryo •seedling, root •seedling, crown •seedling, leaf •immature, inflorescence •floral bracts, before anthesis •pistil, before anthesis •anthers, before anthesis •5 DAP caryopsis •10 DAP caryopsis •16 DAP caryopsis •22 DAP embryo •22 DAP endosperm

Comparison of different barley tissue types representing barley developmental stages. Also comparison of two barley genotypes using limited number ...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

Show
Experiment Name: Transcription patterns during barley development
Accession No: BB3
Microarray: Barley1
Visibility: public
Experiment Type:
Experiment Factor(s):
genotype
•Morex  •Golden Promise
tissue type
•germinating seed, coleoptyle  •germinating seed, radicle  •germinating seed, embryo  •seedling, root  •seedling, crown  •seedling, leaf  •immature, inflorescence  •floral bracts, before anthesis  •pistil, before anthesis  •anthers, before anthesis  •5 DAP caryopsis  •10 DAP caryopsis  •16 DAP caryopsis  •22 DAP embryo  •22 DAP endosperm
Quality Control: biological replicates
Treatment summary:
 genotype  tissue type  # replicates
 Morex  germinating seed, coleoptyle  3
 Morex  germinating seed, radicle  3
 Morex  germinating seed, embryo  3
 Morex  seedling, root  3
 Morex  seedling, crown  3
 Morex  seedling, leaf  3
 Morex  immature, inflorescence  3
 Morex  floral bracts, before anthesis  3
 Morex  pistil, before anthesis  3
 Morex  anthers, before anthesis  3
 Morex  5 DAP caryopsis  3
 Morex  10 DAP caryopsis  3
 Morex  16 DAP caryopsis  3
 Morex  22 DAP embryo  3
 Morex  22 DAP endosperm  3
 Golden Promise  germinating seed, coleoptyle  3
 Golden Promise  germinating seed, radicle  3
 Golden Promise  germinating seed, embryo  3
 Golden Promise  seedling, root  3
 Golden Promise  seedling, crown  3
 Golden Promise  seedling, leaf  3
Total hybridizations: 63
Description: Comparison of different barley tissue types representing barley developmental stages. Also comparison of two barley genotypes using limited number of tissue types
Publication: 'Comparative transcriptomics in the Triticeae', Andreas W Schreiber, Tim Sutton, Rico A Caldo, Elena Kalashyan, Ben Lovell, Gwenda Mayo, Gary J Muehlbauer, Arnis Druka, Robbie Waugh, Roger P Wise, Peter Langridge and Ute Baumann
BMC Genomics 2009, 10:285
pubmed: 19558723
'An atlas of gene expression from seed to seed through barley development', Druka A, Muehlbauer G, Druka I, Caldo R, Baumann U, Rostoks N, Schreiber A, Wise R, Close T, Kleinhofs A, Graner A, Schulman A, Langridge P, Sato K, Hayes P, McNicol J, Marshall D, Waugh R
Functional & Integrative Genomics. 2006 Mar
pubmed: 16547597
'Single-feature polymorphism discovery in the barley transcriptome', Rostoks N, Borevitz JO, Hedley PE, Russell J, Mudie S, Morris J, Cardle L, Marshall DF, Waugh R
Genome Biology. 2005, June;6(6)
pubmed: 15960806
Created: 2004-06-10 09:24:51
Last Update: 2008-08-05 11:38:12
Submitter: Arnis Druka
Name: Arnis Druka
Institution: Scottish
Head of Laboratory:
email(s):
Homepage:

 
Copyright@2001-2013 The PLEXdb Group
All rights reserved.

For problems with the webpages contact PLEXdb webmasters