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Browse MedicagoPLEX Experiment Data

Choose an experiment:
The Medicago truncatula Gene Expression Atlas
Yuhong Tang, The Samuel Robert Noble Foundation (ytang@noble.org)
Experiment design (54 hybridizations)
organism part name
•Flower •Leaf •Nod4d •Nod10d •Nod14d •Nodule •Petiole •Pod •Root •Root-0d •Seed10d •Seed12d •Seed16d •Seed20d •Seed24d •Seed36d •Stem •VegetativeBud

This experiment has been imported from ArrayExpress. Description at ArrayExpress: "Medicago truncatula, which has a relatively small diploid g...[complete overview]

Experiment     Expression     Hybridizations & Samples     Quality Control     Compare Treatments     Downloads    

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Experiment Name: The Medicago truncatula Gene Expression Atlas
Accession No: ME1
Microarray: Medicago61k
Visibility: public
Experiment Type:
Experiment Factor(s):
organism part name
•Flower   •Leaf   •Nod4d   •Nod10d   •Nod14d   •Nodule   •Petiole   •Pod   •Root   •Root-0d   •Seed10d   •Seed12d   •Seed16d   •Seed20d   •Seed24d   •Seed36d   •Stem   •VegetativeBud
Quality Control: biological replicates
Treatment summary:
 organism part name  # replicates
 Flower  3
 Leaf  3
 Nod4d  3
 Nod10d  3
 Nod14d  3
 Nodule  3
 Petiole  3
 Pod  3
 Root  3
 Root-0d  3
 Seed10d  3
 Seed12d  3
 Seed16d  3
 Seed20d  3
 Seed24d  3
 Seed36d  3
 Stem  3
 VegetativeBud  3
Total hybridizations: 54
Description: This experiment has been imported from ArrayExpress.

Description at ArrayExpress:
"Medicago truncatula, which has a relatively small diploid genome, has been adopted as a model species for legume genomics. To enhance its value as a model, we have generated a gene expression atlas that provides a global view of gene expression in all major organ systems of this species, with special emphasis on nodule and seed development."

Note:
The sample descriptions shown at PLEXdb have been extracted directly from Array express without any modification except for 'age'. The sample 'age' at PLEXdb is a combination of three sample fields at ArrayExpress, viz., 'Age', 'TimeUnit' and 'InitialTimePoint'.

For more details, please refer to ArrayExpress [Experiment : E-MEXP-1097], the experimenter's website, http://bioinfo.noble.org/gene-atlas/ and their publication.
Publication: 'A gene expression atlas of the model legume Medicago truncatula', Vagner Benedito, Ivone Torez-Jerez, Jeremy Murray, Andry Andriankaja, Stacey Allen, Klementina Kakar, Maren Wandrey, Jerome Verdier, Helene Zuber, Thomas Ott, Sandra Moreau, Andreas Niebel, Tancred Frickey, Georg Weiller, Ji He, Xinbin Dai, Patrick Zhao, Yuhong Tang, and Michael Udvardi
The Plant Journal
pubmed: 18410479
Created: 2008-09-10 12:22:28
Last Update: 2011-07-16 00:25:02
Submitter: Hong Lu
Experimenter:
Name: Yuhong Tang
Institution: The Samuel Robert Noble Foundation
Head of Laboratory: Michael K. Udvardi
email(s):
ytang@noble.org
Homepage:
http://bioinfo.noble.org/gene-atlas/index.php

 
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