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Experiment Search Results
ATH1-121501
1/112 Experiment AT143 Expression profiling of Arabidopsis wild type Col-0 and pmr5 mutant
Submitter: PLEXdb Curator
Head of Lab: Shauna Somerville
Experiment Factors: genotype
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
genotype
•Col-0 •pmr5 mutant

2/112 Experiment AT142 Oleic acid-dependent modulation of Nitric Oxide Associated 1 protein levels regulate nitric oxide mediate signaling in plant defense.
Submitter: PLEXdb Curator
Head of Lab: Pradeep Kachroo
Experiment Factors: genotype
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
genotype
•WT COL-0 •Mutant ssi2 •Mutant ssi2 act1 •Mutant ssi2 sid2

3/112 Experiment AT141 Effect of oligomycin on transcript levels in Arabidopsis seedling cultures
Submitter: PLEXdb Curator
Head of Lab: Staffan Persson
Experiment Factors: time, treatment
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
treatment
•control (EtOH) •oligomycin
time
•1 hrs •4 hrs

4/112 Experiment AT140 The effects of infection with wild-type or mutant cucumber mosaic virus on the Arabidopsis transcriptome
Submitter: PLEXdb Curator
Head of Lab: John Carr
Experiment Factors: pathogen strains
GeneChip Type: ATH1-121501
Experiment design (9 hybridizations)
pathogen strains
•mock-At •CMV-WT •CMV-A2b

5/112 Experiment AT139 Expression data from low R:FR - JA crosstalk in Arabidopsis
Submitter: PLEXdb Curator
Head of Lab: Carlos L. Ballare
Experiment Factors: growth regulator, light
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
light
•high R/FR •low R/FR
growth regulator
•mock •JA

6/112 Experiment AT138 Expression data from LCM-captured Arabidopsis root cells after challenge with Meloidogyne incognita
Submitter: PLEXdb Curator
Head of Lab: Christopher Taylor
Experiment Factors: nematode infestation, time
GeneChip Type: ATH1-121501
Experiment design (16 hybridizations)
nematode infestation
•control root cell •infested giant cell
time
•14 dai •21 dai

7/112 Experiment AT137 Arabidopsis thaliana wild-type and pskr1-5 transcriptome upon the compatible interaction with Hyaloperonospora arabidopsidis
Submitter: PLEXdb Curator
Head of Lab: Harald Keller
Experiment Factors: genotype, pathogen inoculation
GeneChip Type: ATH1-121501
Experiment design (8 hybridizations)
genotype
•wild type •pskr1-5
pathogen inoculation
•water •Emwa1

8/112 Experiment AT136 Transcriptome profiling of LecRKVI.2 over-expressor plants.
Submitter: PLEXdb Curator
Head of Lab: Laurent Zimmerli
Experiment Factors: genotype
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
genotype
•Col-O •OH1

9/112 Experiment AT135 SA, elf18 treatment of WT and tbf1 mutant
Submitter: PLEXdb Curator
Head of Lab: Xinnian Dong
Experiment Factors: genotype, treatment
GeneChip Type: ATH1-121501
Experiment design (24 hybridizations)
genotype
•WT •tbf1 mutant
treatment
•mock SA •SA •mock elf •elf

10/112 Experiment AT134 Volatiles of two growth-inhibiting rhizobacteria commonly enroll AtWRKY18 function
Submitter: PLEXdb Curator
Head of Lab: Birgit Piechulla
Experiment Factors: time, treatment
GeneChip Type: ATH1-121501
Experiment design (20 hybridizations)
time
•0 hrs •6 hrs •12 hrs •24 hrs
treatment
•untreated •Sp HRO-C48 •Sm R3089

11/112 Experiment AT133 affy_syringae_malaga_athaliana-Role of different proteases in plant defence
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: genotype, pathogen infection
GeneChip Type: ATH1-121501
Experiment design (24 hybridizations)
genotype
•col •ulp1c/ulp1d
pathogen infection
•No treatment •mock •pto-wt •pto-hop •pto-hop-mutant

12/112 Experiment AT132 Ascorbic acid-dependent regulation of growth involves abscisic acid signalling through ABI-4
Submitter: PLEXdb Curator
Head of Lab: Christine Foyer
Experiment Factors: genotype
GeneChip Type: ATH1-121501
Experiment design (27 hybridizations)
genotype
•Col 0-1 •abi4-102-I •vtc2-I •abi4-vtc2-I •Col 0-II •abi4-102-II •vtc1-II

13/112 Experiment AT131 Transcriptome analysis of vtc1, abi4-102 and wild type Col 0
Submitter: PLEXdb Curator
Head of Lab: Christine Foyer
Experiment Factors: genotype
GeneChip Type: ATH1-121501
Experiment design (10 hybridizations)
genotype
•Col O •abi4-102 •vtc1

14/112 Experiment AT130 Transcriptome analysis of vtc2, abi4-102 and the corresponding double mutant abi4 vtc2
Submitter: PLEXdb Curator
Head of Lab: Christine Foyer
Experiment Factors: genotype
GeneChip Type: ATH1-121501
Experiment design (17 hybridizations)
genotype
•Col O •abi4-102 •vtc2 •abi4-vtc2

15/112 Experiment AT129 Gene expression data from ABA, [5-(3,4-Dichlorophenyl)Furan-2-yl]-Piperidin-1-ylMethanethione (DFPM), and ABA+DFPM treated Arabidopsis thaliana seedlings.
Submitter: PLEXdb Curator
Head of Lab: Julian Schroeder
Experiment Factors: compound
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
compound
•control •DFPM •ABA •ABADFPM

16/112 Experiment AT128 Comparison of gene expression profiles between erf5/6 and WT Arabidopsis in response to chitooctaose
Submitter: PLEXdb Curator
Head of Lab: Gary Stacey
Experiment Factors: genotype, treatment
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
genotype
•erf5/6 mutant •WT
treatment
•water •chitooctaose

17/112 Experiment AT127 Effect of biotin deficiency on gene expression in Aravbidopsis leaves
Submitter: PLEXdb Curator
Head of Lab: E. Tapio Palva
Experiment Factors: genetic line, treatment
GeneChip Type: ATH1-121501
Experiment design (9 hybridizations)
genetic line
•wild type •bio4-1
treatment
•water •200µM biotin

18/112 Experiment AT126 affy_l2bctv_ath-Expression viral protein L2 BCTV in Arabidopsis thaliana
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: genotype
GeneChip Type: ATH1-121501
Experiment design (9 hybridizations)
genotype
•L2.5 •L2.4 •Wt

19/112 Experiment AT125 LEAFY target genes reveal a link between flower development and biotic stimulus response (III)
Submitter: PLEXdb Curator
Head of Lab: Doris Wagner
Experiment Factors: genotype
GeneChip Type: ATH1-121501
Experiment design (8 hybridizations)
genotype
•LFY-GR •WT

20/112 Experiment AT124 Effect of gibberellins on metabolism during rosette growth in Arabidopsis
Submitter: PLEXdb Curator
Head of Lab: Bernd Muller-Roeber
Experiment Factors: treatment
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
treatment
•control •PBZ •GA

21/112 Experiment AT123 Gene expression from Arabidopsis under high light conditions
Submitter: PLEXdb Curator
Head of Lab: Juan B. Arellano
Experiment Factors: stress condition
GeneChip Type: ATH1-121501
Experiment design (9 hybridizations)
stress condition
•control •dark •light

22/112 Experiment AT122 G3P triggered changes in systemic transcriptome
Submitter: PLEXdb Curator
Head of Lab: Pradeep Kachroo
Experiment Factors: compound
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
compound
•mock •G3P

23/112 Experiment AT121 Gene expression changes in wild type, tga2tga3tga5tga6, and sid2-2 plants after treatment with the safeners mefenpyr and isoxadifen
Submitter: PLEXdb Curator
Head of Lab: Claus Schwechheimer
Experiment Factors: compound, genotype
GeneChip Type: ATH1-121501
Experiment design (18 hybridizations)
genotype
•ColO •4tga •sid2-2
compound
•mock •safener

24/112 Experiment AT120 Evidence that XRN4, an Arabidopsis homolog of exoribonuclease XRN1, preferentially impacts transcripts with certain sequences or in particular functional categories.
Submitter: PLEXdb Curator
Head of Lab: Pamela J. Green
Experiment Factors: genotype
GeneChip Type: ATH1-121501
Experiment design (4 hybridizations)
genotype
•xrn4-5 •Col-O

25/112 Experiment AT119 comparison of powdery mildew-induced gene expression between Col-0 and the edr1 mutant
Submitter: PLEXdb Curator
Head of Lab: Roger Innes
Experiment Factors: genotype, time
GeneChip Type: ATH1-121501
Experiment design (32 hybridizations)
genotype
•Col-O •edr1
time
•0hr •18hr •36hr •96hr

26/112 Experiment AT118 H. arabidopsidis EMWA1 infection, time course experiment
Submitter: PLEXdb Curator
Head of Lab: Xinnian Dong
Experiment Factors: genotype, time
GeneChip Type: ATH1-121501
Experiment design (20 hybridizations)
genotype
•WT •rpp4
time
•0 day •0.5 day •2 days •4 days •6 days

27/112 Experiment AT117 The impact of BRCA2A and SSN2 on plant defense genes
Submitter: PLEXdb Curator
Head of Lab: Xinnian Dong
Experiment Factors: compound, genotype
GeneChip Type: ATH1-121501
Experiment design (17 hybridizations)
genotype
•npr1_sni1 •npr1_sni1_brca2a •npr1_sni1_ssn2
compound
•water •SA

28/112 Experiment AT116 Expression data from Arabidopsis seedlings treated with Pseudomonas aeruginosa (strain PA14)
Submitter: PLEXdb Curator
Head of Lab: Frederick M. Ausubel
Experiment Factors: pathogen strains
GeneChip Type: ATH1-121501
Experiment design (4 hybridizations)
pathogen strains
•PA14 •PA14-gacA mutant

29/112 Experiment AT115 wt and opr3 control and systemic wounding
Submitter: PLEXdb Curator
Head of Lab: Robert Fluhr
Experiment Factors: genotype, treatment
GeneChip Type: ATH1-121501
Experiment design (4 hybridizations)
genotype
•wt •opr3
treatment
•control •wounding

30/112 Experiment AT114 GENE-counter, a computational and statistical pipeline for assessing RNA-Seq data for genome-wide expression differences
Submitter: PLEXdb Curator
Head of Lab: Jeff Chang
Experiment Factors: treatment
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
treatment
•hrcC •MgCl2

31/112 Experiment AT113 Transcription profiling of WT and dsr1 Arabidopsis seedlings treated with salicylic acid
Submitter: PLEXdb Curator
Head of Lab: Karam B. Singh
Experiment Factors: compound, genotype
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
genotype
•WT •dsr1
compound
•mock •SA

32/112 Experiment AT112 Expression data from Arabidopsis thaliana - Pseudomonas interaction
Submitter: PLEXdb Curator
Head of Lab: Joost T. Van Dongen
Experiment Factors: treatment
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
treatment
•control •Pseudomonas G62

33/112 Experiment AT111 Study of the effect of C2 on the transcriptome and the response to MeJA
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: compound, genetic line
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
genetic line
•transgenic C2 •control LUC
compound
•NaCl control •MeJA

34/112 Experiment AT110 Expression data in response to neonicotinoid insecticides
Submitter: PLEXdb Curator
Head of Lab: Mary C Wildermuth
Experiment Factors: compound
GeneChip Type: ATH1-121501
Experiment design (8 hybridizations)
compound
•untreated •CLO •IMI •SA

35/112 Experiment AT109 Genes regulated by GRF1 and GRF3 in Arabidopsis roots
Submitter: Tarek Hewezi
Head of Lab: Thomas Baum
Experiment Factors: genotype
GeneChip Type: ATH1-121501
Experiment design (15 hybridizations)
genotype
•Arabidopsis thaliana ecotypes Col-0 •Arabidopsis thaliana ecotypes WS •Triple mutant grf1/grf2/grf3 •P35S:rGRF1 overexpression •P35S:rGRF3 overexpression

36/112 Experiment AT108 High resolution NO3 response of Arabidopsis Roots
Submitter: PLEXdb Curator
Head of Lab: Gloria M Coruzzi
Experiment Factors: compound, time
GeneChip Type: ATH1-121501
Experiment design (26 hybridizations)
time
•0 mins •3 mins •6 mins •9 mins •12 mins •15 mins •20 mins
compound
•Basal medium •KCl •KNO3

37/112 Experiment AT107 Expression data from Arabidopsis Seed Compartments at 5 discrete stages of development
Submitter: PLEXdb Curator
Head of Lab: Robert B. Goldberg
Experiment Factors: developmental stage name, organism part name
GeneChip Type: ATH1-121501
Experiment design (87 hybridizations)
developmental stage name
•globular stage •pre-globular stage •linear-cotyledon stage •heart stage •mature green stage •bending cotyledon stage
organism part name
•embryo proper •cellularized endosperm •micropylar endosperm •peripheral endosperm •chalazal endosperm •chalazal seed coat •seed coat •whole seeds •suspensor

38/112 Experiment AT106 Expression data from Arabidopsis seed compartments at the bending coyledon stage
Submitter: PLEXdb Curator
Head of Lab: Robert B. Goldberg
Experiment Factors: organism part name
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
organism part name
•embryo proper •peripherial endosperm •chalazal endosperm •chalazal seed coat •general seed coat •whole seeds

39/112 Experiment AT105 Expression data from Arabidopsis seed compartments at the mature green stage.
Submitter: PLEXdb Curator
Head of Lab: Robert B. Goldberg
Experiment Factors: organism part name
GeneChip Type: ATH1-121501
Experiment design (14 hybridizations)
organism part name
•embryo proper •micropylar endosperm •peripherial endosperm •chalazal endosperm •chalazal seed coat •seed coat •whole seeds

40/112 Experiment AT104 Expression data from Arabidopsis seed compartments at the heart stage.
Submitter: PLEXdb Curator
Head of Lab: Robert B. Goldberg
Experiment Factors: organism part name
GeneChip Type: ATH1-121501
Experiment design (16 hybridizations)
organism part name
•embryo proper •micropylar endosperm •peripheral endosperm •chalazal endosperm •chalazal seed coat •general seed coat •whole seeds

41/112 Experiment AT103 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
Submitter: PLEXdb Curator
Head of Lab: Robert B. Goldberg
Experiment Factors: organism part name
GeneChip Type: ATH1-121501
Experiment design (14 hybridizations)
organism part name
•embryo proper •cellularlized endosperm •chalazal endosperm •chalazal seed coat •general seed coat •whole seeds •micropylar endosperm

42/112 Experiment AT102 Expression data from Arabidopsis seed compartments at the pre-globular stage
Submitter: PLEXdb Curator
Head of Lab: Robert B. Goldberg
Experiment Factors: organism part name
GeneChip Type: ATH1-121501
Experiment design (14 hybridizations)
organism part name
•embryo proper •micropylar endosperm •peripheral endosperm •chalazal endosperm •chalazal seed coat •general seed coat •whole seed sections

43/112 Experiment AT101 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
Submitter: PLEXdb Curator
Head of Lab: Robert B. Goldberg
Experiment Factors: organism part name
GeneChip Type: ATH1-121501
Experiment design (17 hybridizations)
organism part name
•embryo proper •suspensor •micropylar endosperm •peripheral endosperm •chalazal endosperm •chalazal seed coat •general seed coat •whole seeds

44/112 Experiment AT100 Transcriptome changes triggered by Hyaloperonospora parasitica arabidopsis Noco2 in WT and wrky72 mutants at 96 hpt
Submitter: PLEXdb Curator
Head of Lab: Thomas Eulgem
Experiment Factors: genotype, pathogen infection
GeneChip Type: ATH1-121501
Experiment design (18 hybridizations)
genotype
•Wildtype •wrky72-1 mutant •wrky72-2 mutant
pathogen infection
•mock •HpaNoco2 treated

45/112 Experiment AT99 Comparison between NuGEN's WT-Ovation Pico and One-Direct Amplification Systems
Submitter: PLEXdb Curator
Head of Lab: Lauren M McIntyre
Experiment Factors: Amplification method, Nematode infection
GeneChip Type: ATH1-121501
Experiment design (20 hybridizations)
Amplification method
•OneDirect •Pico
Nematode infection
•Control Root Cells •Giant Cells

46/112 Experiment AT98 Microarray analysis of cross-talks between Jasmonate acid and ethylene signaling in Arabidopsis seedlings
Submitter: PLEXdb Curator
Head of Lab: Hongwei Guo
Experiment Factors: strain, treatment
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
strain
•Col-0 •coi1-2 •ein3eil1
treatment
•Mock •MeJA

47/112 Experiment AT97 Arabidopsis thaliana/Phytophthora parasitica compatible interaction transcriptome
Submitter: PLEXdb Curator
Head of Lab: Harald Keller
Experiment Factors: time
GeneChip Type: ATH1-121501
Experiment design (10 hybridizations)
time
•0 hai •2.5 hai •6 hai •10.5 hai •30 hai

48/112 Experiment AT96 Arabidopsis pvip mutants
Submitter: PLEXdb Curator
Head of Lab: Prof. Andy Maule
Experiment Factors: strain
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
strain
•Col-0 wildtype •pvip1-pvip2 RNAi

49/112 Experiment AT95 Biological function of Pip3
Submitter: PLEXdb Curator
Head of Lab: Dr. Pascal Gamas
Experiment Factors: genetic line
GeneChip Type: ATH1-121501
Experiment design (27 hybridizations)
genetic line
•KO-Pip3 •pGli-69-24 •pGli-69-31 •Pip3-3HA6H-5 •Pip3-3HA6H-1 •Pip3-3HA-9 •Pip3-3HA-1 •Nd-1 •Col-0

50/112 Experiment AT94 Systemic responses to Pseudomonas syringae infection
Submitter: PLEXdb Curator
Head of Lab: Prof. Murray Grant
Experiment Factors: pathogen strain, time
GeneChip Type: ATH1-121501
Experiment design (27 hybridizations)
time
•8 hai •12 hai •21 hai
pathogen strain
•DC3000 wildtype •hrpA mutant •avrRpm1

51/112 Experiment AT93 Differential gene expression profiling from Arabidopsis thaliana wild type (Columbia-0) and lht1 mutant leaves
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: pathogen inoculation, strain
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
strain
•Wildtype •Mutant
pathogen inoculation
•Pst •Untreated

52/112 Experiment AT92 pad4 vs. pad4 est1b
Submitter: PLEXdb Curator
Head of Lab: Karel Riha
Experiment Factors: strain
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
strain
•pad4 mutant •pad4 est1b doublemutant

53/112 Experiment AT91 Arabidopsis thaliana mutant leaves treated with Pseudomonas syringae ES4326
Submitter: PLEXdb Curator
Head of Lab: Jane Glazebrook
Experiment Factors: pathogen inoculation, strain
GeneChip Type: ATH1-121501
Experiment design (24 hybridizations)
strain
•coi1 •Col0 •ein2 •npr1 •pad2 •pad4 •sid2
pathogen inoculation
•mock •PsmES4326

54/112 Experiment AT90 Gene expression changes in Arabidopsis thaliana treated with Myzus persicae saliva
Submitter: PLEXdb Curator
Head of Lab: Dr. Georg Jander
Experiment Factors: treatment
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
treatment
•Control •M-persicae saliva

55/112 Experiment AT89 Indolic metabolites are required for antifungal defense of the Arabidopsis mlo2 mutant
Submitter: PLEXdb Curator
Head of Lab: Ralph Panstruga
Experiment Factors: genotype, time
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
genotype
•Wildtype •mlo-triple mutant
time
•5 weeks •6 weeks •7 weeks

56/112 Experiment AT88 Effect of auxin signaling on flg22 response
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: strain, time, treatment
GeneChip Type: ATH1-121501
Experiment design (45 hybridizations)
strain
•Wildtype •AFB1 •miR393
treatment
•flg22 •Atum •NAA •NAA/flg
time
•0 hrs •1 hrs •2 hrs

57/112 Experiment AT87 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: strain, time
GeneChip Type: ATH1-121501
Experiment design (18 hybridizations)
time
•0 hrs •90-105 mins •2-4 hrs •6 hrs
strain
•Wildtype •AtMYB30

58/112 Experiment AT86 Arabidopsis thaliana six days after infection with Agrobacterium tumefaciens
Submitter: PLEXdb Curator
Head of Lab: Prof. Hedrich
Experiment Factors: pathogen inoculation
GeneChip Type: ATH1-121501
Experiment design (9 hybridizations)
pathogen inoculation
•mock-inoculated •C58 A-tumefaciens •GV3101 A-tumefaciens

59/112 Experiment AT85 Identification of early flg22 responsive genes in Arabidopsis seedlings
Submitter: PLEXdb Curator
Head of Lab: Jen Sheen
Experiment Factors: time
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
time
•Control 0 mins •30 mins •60 mins

60/112 Experiment AT84 Transcript profile of chitosan-treated Arabidopsis seedlings
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: treatment
GeneChip Type: ATH1-121501
Experiment design (4 hybridizations)
treatment
•mock •chitosan

61/112 Experiment AT83 Arabidopsis thaliana gene expression changes upon treatment with green peach aphid saliva
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: insect infestation
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
insect infestation
•control •M-persicae infested

62/112 Experiment AT82 Identification of early flg22 responsive genes in Arabidopsis mesophyll cells
Submitter: PLEXdb Curator
Head of Lab: Jen Sheen
Experiment Factors: time
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
time
•Control 0 mins •30 mins •60 mins

63/112 Experiment AT81 Identification of CPK5ac and CPK11ac early target genes in Arabidopsis mesophyll cells
Submitter: PLEXdb Curator
Head of Lab: Jen Sheen
Experiment Factors: treatment
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
treatment
•Control plasmid DNA •CPK5ac-constitutive •CPK11ac-constitutive

64/112 Experiment AT80 Laser microdissection of Arabidopsis cells at the powdery mildew infection site
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, pathogen inoculation, tissue type name
GeneChip Type: ATH1-121501
Experiment design (16 hybridizations)
genotype
•Col-0 •eds16
tissue type name
•laser microdisected •whole leaf •whole leaf amplified •leaf scrape
pathogen inoculation
•G-orontii •uninoculated

65/112 Experiment AT79 Expression profiling of the Arabidopsis Mediator complex mutant pft1/med25 and wildtype infected with Fusarium oxysporum
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, pathogen inoculation
GeneChip Type: ATH1-121501
Experiment design (16 hybridizations)
pathogen inoculation
•Mock •F-oxysporum
genotype
•Col-0-WT •pft1-mut

66/112 Experiment AT78 Expression data from Arabidopsis Seedlings treated with Salicylic Acid
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: compound
GeneChip Type: ATH1-121501
Experiment design (5 hybridizations)
compound
•Salicylic Acid •Water

67/112 Experiment AT77 Arabidopsis thaliana three hours after infection with Agrobacterium tumefaciens
Submitter: PLEXdb Curator
Head of Lab: Prof. Hedrich
Experiment Factors: treatment
GeneChip Type: ATH1-121501
Experiment design (15 hybridizations)
treatment
•mock •Agr-tum-C58-inoculated •Agr-tum-GV3101-inoculated

68/112 Experiment AT76 Transcriptome of mature Arabidopsis thaliana crown galls
Submitter: PLEXdb Curator
Head of Lab: Prof. Hedrich
Experiment Factors: pathogen inoculation
GeneChip Type: ATH1-121501
Experiment design (8 hybridizations)
pathogen inoculation
•mock •Agr-tum-C58-inoculated

69/112 Experiment AT75 Transcriptome changes triggered by the synthetic defense elicitors DCA and INA in Arabidopsis thaliana
Submitter: PLEXdb Curator
Head of Lab: Thomas Eulgem
Experiment Factors: strain, time, treatment
GeneChip Type: ATH1-121501
Experiment design (24 hybridizations)
strain
•Col-0 •npr1-3
treatment
•DCA •INA •Mock
time
•2 days •6 days

70/112 Experiment AT74 Golovinomyces orontii time course with Col-0 and eds16-1
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, pathogen inoculation, time
GeneChip Type: ATH1-121501
Experiment design (56 hybridizations)
genotype
•Col-0 •eds16-1
pathogen inoculation
•G-orontii •Uninoculated
time
•0 hai •6 hai •1 dpi •3 dpi •5 dpi •7 dpi

71/112 Experiment AT73 Flg22 regulates MAP kinase 6 interaction with an ethylene response factor substrate via ethylene
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: strain, treatment
GeneChip Type: ATH1-121501
Experiment design (24 hybridizations)
strain
•Col-0 •erf104-ko •35S::ERF104 •mpk6-ko
treatment
•Flg22 •Water

72/112 Experiment AT72 C. fulvum Avr2
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genetic line
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
genetic line
•Col-0 •Avr2-transgenic

73/112 Experiment AT71 Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: pathogen inoculation
GeneChip Type: ATH1-121501
Experiment design (4 hybridizations)
pathogen inoculation
•G-rosea Spores •Filter Paper Control

74/112 Experiment AT70 Expression profiling of the overexpression of MILDEW-INDUCED LESIONS 4
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: treatment
GeneChip Type: ATH1-121501
Experiment design (8 hybridizations)
treatment
•Water •BTH

75/112 Experiment AT69 Comparing gene expression between wild type and trichomeless mutants
Submitter: PLEXdb Curator
Head of Lab: Erich Grotewold
Experiment Factors: genotype
GeneChip Type: ATH1-121501
Experiment design (4 hybridizations)
genotype
•wildtype •gl1 •ttg1 •gl3egl3

76/112 Experiment AT68 MILDEW-INDUCED LESIONS 4 encodes a novel regulator of the salicylic acid defense response
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: strain, treatment
GeneChip Type: ATH1-121501
Experiment design (24 hybridizations)
strain
•Col-0 •mil4 •mil4sid2 •sid2
treatment
•Water •BTH

77/112 Experiment AT67 A LysM Receptor-like Kinase Mediates Chitin Perception and Fungal Resistance in Arabidopsis
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: strain, treatment
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
strain
•Wildtype •Chitin-Receptor-Mut
treatment
•Chitooctaose •Water

78/112 Experiment AT66 Systemic response to avirulent bacterial infection
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: pathogen inoculation
GeneChip Type: ATH1-121501
Experiment design (9 hybridizations)
pathogen inoculation
•P-syr DC3000 •P-syr DC3000(hrpA) •P-syr DC3000(avrRpm1)

79/112 Experiment AT65 Group II-A WRKY transcription factors and early leaf senescence
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: pathogen inoculation, strain
GeneChip Type: ATH1-121501
Experiment design (7 hybridizations)
strain
•Col-0 •WRKY40 •WRKY18 •WRKY60 •WRKY18/40 •WRKY53
pathogen inoculation
•Control •Pst-DC3000

80/112 Experiment AT64 Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, pathogen inoculation
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
genotype
•Col-0 WT •gh3.5-1D Mutant
pathogen inoculation
•Pst DC3000(avrRpt2) •Uninoculated Control

81/112 Experiment AT63 Silverleaf whitefly 2nd instar feeding on 7-week old Arabidopsis thaliana rosette leaves
Submitter: PLEXdb Curator
Head of Lab: Dr. Linda Walling
Experiment Factors: insect infestation
GeneChip Type: ATH1-121501
Experiment design (4 hybridizations)
insect infestation
•Whitefly Infested •Uninfested

82/112 Experiment AT59 Response to Erysiphe orontii infection, time course experiment
Submitter: PLEXdb Curator
Head of Lab: Fred Ausubel
Experiment Factors: pathogen infection, time
GeneChip Type: ATH1-121501
Experiment design (48 hybridizations)
pathogen infection
•Inoculated •Non-Inoculated
time
•6 hai •12 hai •18 hai •24 hai •48 hai •72 hai •96 hai •120 hai

83/112 Experiment AT54 UV-B Responses in Light Grown Plants: Similarities to Biotic Stress
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: treatment
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
treatment
•A1-UV-B •A2-UV-A •A3-Visible Light •A4-P-parasitica-on-resist •A5-mock water treatment •A6-P-parasitica-on-suscept

84/112 Experiment AT53 Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: pathogen inoculation
GeneChip Type: ATH1-121501
Experiment design (4 hybridizations)
pathogen inoculation
•A-tumefaciens-induced tumours •Needle injury control

85/112 Experiment AT52 Pseudomonas half leaf injection
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: pathogen inoculation, time
GeneChip Type: ATH1-121501
Experiment design (32 hybridizations)
pathogen inoculation
•P-syr-avr •P-syr •Mock-MgCl2 •No-treat-control
time
•0 hrs •4 hrs •8 hrs •16 hrs •24 hrs •48 hrs

86/112 Experiment AT51 Response to Botrytis cinerea infection
Submitter: PLEXdb Curator
Experiment Factors: pathogen inoculation, time
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
pathogen inoculation
•B-Cinerea •Control
time
•18 hrs •48 hrs

87/112 Experiment AT50 Growth promotion of Arabidopsis by Trichoderma hamatum
Submitter: PLEXdb Curator
Head of Lab: Christopher Thornton
Experiment Factors: pathogen inoculation
GeneChip Type: ATH1-121501
Experiment design (2 hybridizations)
pathogen inoculation
•control •Trichoderma

88/112 Experiment AT49 Transcriptome changes of Arabidopsis during pathogen and insect attack
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: pest infestation, time
GeneChip Type: ATH1-121501
Experiment design (14 hybridizations)
pest infestation
•control •avrPstDC3000 •Abrassicicola •Prapae •F-occidentalis •M-persicae
time
•12 hrs •24 hrs •48 hrs •72 hrs

89/112 Experiment AT48 Comparative ABA-treatment of Col-O vector control and transgenic plants
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, treatment
GeneChip Type: ATH1-121501
Experiment design (4 hybridizations)
genotype
•ERD15-overexp •control
treatment
•ABA •no-ABA

90/112 Experiment AT46 Targets of AtWRKY27 in Arabidopsis leaves
Submitter: PLEXdb Curator
Head of Lab: Dr. Imre E. Somssich
Experiment Factors: genetic line
GeneChip Type: ATH1-121501
Experiment design (4 hybridizations)
genetic line
•empty-vect-XVE-SALK •empty-vect-XVE-ETL •WK27-XVE-SALK •WK27-XVE-ETL

91/112 Experiment AT44 Tween 20 inducible genes
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: compound, time
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
compound
•water •Tween20
time
•1 hrs •2.5 hrs

92/112 Experiment AT43 Auxin mediated gene expression in WT, arf7, arf19 and arf7 arf19 mutants
Submitter: PLEXdb Curator
Head of Lab: Athanasios Theologis
Experiment Factors: compound, genotype
GeneChip Type: ATH1-121501
Experiment design (24 hybridizations)
genotype
•col_wt •nph4-1(arf7) •arf19-1 •nph4-1_and_arf19-1
compound
•Control •Auxin

93/112 Experiment AT42 The effect of TuMV on translation initiation in Arabidopsis.
Submitter: Jackson R Moeller
Head of Lab: Steve Whitham
Experiment Factors: pathogen infection, RNA fraction
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
pathogen infection
•TuMV inoculated •mock inoculated
RNA fraction
•polysomal RNA •total RNA

94/112 Experiment AT41 Expression Atlas of Arabidopsis Development, Mutants (AtGenExpress)
Submitter: Hong Lu
Head of Lab: Detlef Weigel, Jan Lohmann, Markus Schmid
Experiment Factors: genotype, organism part name
GeneChip Type: ATH1-121501
Experiment design (60 hybridizations)
genotype
•Col-0 •ag-12 •ap1-15 •ap2-6 •ap3-6 •clv3-7 •lfy-12 •ufo-1 •gl1T
organism part name
•flow12 •inflo •roset4_1l •roset12

95/112 Experiment AT40 Expression Atlas of Arabidopsis Development (AtGenExpress)
Submitter: Hong Lu
Head of Lab: Detlef Weigel, Jan Lohmann, Markus Schmid
Experiment Factors: organism part name
GeneChip Type: ATH1-121501
Experiment design (189 hybridizations)
organism part name
•Col-0_cotyl •Col-0_hyp •Col-0_root7 •Col-0_veg_leaf •Col-0_leaf_1-2 •Col-0_shoot_veg •Col-0_seedl_green •Col-0_shoot_trans •Col-0_root17 •Col-0_roset4_1l •Col-0_roset2 •Col-0_roset4 •Col-0_roset6 •Col-0_roset8 •Col-0_roset10 •Col-0_roset12 •Col-0_lf7_petio •Col-0_lf7_prox •Col-0_lf7_distal •Col-0_whole21d •Col-0_whole22d •Col-0_whole23d •Col-0_senescent •Col-0_cauline •Col-0_stem_2nd •Col-0_stem_1st •Col-0_inflo •Col-0_flow9 •Col-0_flow10/11 •Col-0_flow12 •Col-0_flow12_sepal •Col-0_flow12_petal •Col-0_flow12_stam •Col-0_flow12_carp •Col-0_flow15 •Col-0_flow15_pedi •Col-0_flow15_sepal •Col-0_flow15_petal •Col-0_flow15_stam •Col-0_flow15_carp •Col-0_pollen •Col-0_sil3 •Col-0_sil4 •Col-0_sil5 •Col-0_seed6 •Col-0_seed7 •Col-0_seed8 •Col-0_seed9 •Col-0_seed10 •Col-0_roset7 •Col-0_roset14 •Col-0_roset21 •Col-0_leaf •Col-0_flower •Col-0_root_MS1 •Col-0_root_GM-8 •Col-0_root_GM5-8 •Col-0_seedl_GM •Col-0_seedl_GM5 •Col-0_root_GM-21 •Col-0_root_GM5-21 •Col-0_sedlGM-21 •Col-0_sedlGM5-21

96/112 Experiment AT31 Penetration resistance in Arabidopsis: Wild-type and ataf1-1 mutant response to Bgh 12 hrs after inoculation, 2*2 factorial design
Submitter: Michael Krogh Jensen
Head of Lab: David B. Collinge
Experiment Factors: genotype, treated or untreated
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
genotype
•Wild-type Arabidopsis, ecotype Col-0 •ataf1-1 mutant, ecotype Col-0
treated or untreated
•Un-inoculated •Bgh inoculated

97/112 Experiment AT26 3-week old Arabidopsis Col-0 and pmr4 plants were infected with Erysiphe cichoracearum, 3dpi
Submitter: Shiquan Wu
Head of Lab: David B. Collinge
Experiment Factors: organism part; treated or untreated
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
genotype
•Wild-type Arabidopsis, ecotype Col-0 •ataf1-1 mutant, ecotype Col-0
treated or untreated
•Un-inoculated •Bgh inoculated

98/112 Experiment AT23 AtGenExpress: Pseudomonas half leaf injection
Submitter: Lishuang Shen
Head of Lab: David B. Collinge
Experiment Factors: pathogen isolates; time
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
genotype
•Wild-type Arabidopsis, ecotype Col-0 •ataf1-1 mutant, ecotype Col-0
treated or untreated
•Un-inoculated •Bgh inoculated

99/112 Experiment AT20 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses-- cold damage repair
Submitter: Lishuang Shen
Head of Lab: Dr Gareth Warren
Experiment Factors: time
GeneChip Type: ATH1-121501
Experiment design (6 hybridizations)
time
•0 •T1 •T2

100/112 Experiment AT19 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses- cold damage-prevention
Submitter: Lishuang Shen
Head of Lab: Dr Gareth Warren
Experiment Factors: genotype, temperature
GeneChip Type: ATH1-121501
Experiment design (20 hybridizations)
genotype
•Col0 •sfr2 •sfr3 •sfr6
temperature
•COLD •NORMAL •DROUGHT

101/112 Experiment AT18 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
Submitter: Lishuang Shen
Head of Lab: Dr Malcolm Campbell
Experiment Factors: genotype, organism part
GeneChip Type: ATH1-121501
Experiment design (36 hybridizations)
genotype
•Col0 •AtMYB61KO •AtMYB51KO •abi1 •aba1 •axr1 •max4 •Ler
organism part
•cork •xylem •hypocotyl

102/112 Experiment AT17 Indole acetic acid treatment-dose response and time course
Submitter: Lishuang Shen
Head of Lab: Christopher Town
Experiment Factors: compound, time
GeneChip Type: ATH1-121501
Experiment design (24 hybridizations)
compound
•IAA0.1um •IAA1um
time
•0hai •1hai •3hai

103/112 Experiment AT16 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
Submitter: Lishuang Shen
Head of Lab: Dr Nicholas Kruger
Experiment Factors: dose, genotype
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
dose
•wild type •tpt-1
genotype
•Low light •High light

104/112 Experiment AT15 Analysis of anther development by analysing downstream genes controlled by MS1
Submitter: Lishuang Shen
Head of Lab: Dr Zoe Wilson
Experiment Factors: genotype, tissue type
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
genotype
•ms1 •Ler-0 wt
tissue type
•Young Flower Buds •Old Flower Buds

105/112 Experiment AT14 Genes affected by hog1 alleviation of CHS silencing
Submitter: Lishuang Shen
Head of Lab: Dr Ian Furner
Experiment Factors: genotype
GeneChip Type: ATH1-121501
Experiment design (8 hybridizations)
genotype
•CHS-silenced type (ECG) •anthocyanin-producing revertants (15B)

106/112 Experiment AT13 Impact of Type III effectors on plant defense responses
Submitter: PLEXdb Curator
Head of Lab: Dr Murray Grant
Experiment Factors: compound, time
GeneChip Type: ATH1-121501
Experiment design (27 hybridizations)
compound
•Mock •DC3000 •DC3000hrpA •DC3000::avrRpm1
time
•2hr •4hr •12hr

107/112 Experiment AT12 Gene expression and carbohydrate metabolism through the diurnal cycle
Submitter: Lishuang Shen
Head of Lab: Dr Steve Smith
Experiment Factors: time
GeneChip Type: ATH1-121501
Experiment design (22 hybridizations)
time
•0hr •1hr •2hr •4hr •8hr •12hr •13hr •14hr •16hr •20hr •24hr

108/112 Experiment AT11 Transcriptome analysis of glyoxylate cycle knock-out mutants in early stages of seedling development
Submitter: Lishuang Shen
Head of Lab: Dr Steven Smith
Experiment Factors: genotype
GeneChip Type: ATH1-121501
Experiment design (12 hybridizations)
genotype
•KOs in malate synthase (ms) •KOs in isocitrate lyase (icl) •Columbia •Ws

109/112 Experiment AT10 Arabidopsis thaliana gene expression after 6 days in shoot induction medium
Submitter: Rhonda DeCook
Head of Lab: Dan
Experiment Factors: genetic line
GeneChip Type: ATH1-121501
Experiment design (30 hybridizations)
genetic line
•line 4 •line 5 •line 13 •line 33 •line 35 •line 37 •line 115 •line 190 •line 191 •line 194 •line 217 •line 231 •line 232 •line 238 •line 242 •line 245 •line 263 •line 267 •line 283 •line 284 •line 288 •line 295 •line 302 •line 303 •line 332 •line 356 •line358 •line 367 •line 370 •line 377

110/112 Experiment AT8 Expression analysis of Arabidopsis suspension cells during sucrose starvation.
Submitter: Diane C Bassham
Experiment Factors: compound, time
GeneChip Type: ATH1-121501
Experiment design (9 hybridizations)
compound
•Plus Sucrose •Minus Sucrose •Minus Suc/Plus PEG
time
•0 hour •24 hour •48 hour

111/112 Experiment AT6 Loss of a callose synthase results in salicylic acid-dependent disease resistance
Submitter: Lishuang Shen
Head of Lab: Somerville, Shauna
Experiment Factors: genotype, pathogen isolates
GeneChip Type: ATH1-121501
Experiment design (16 hybridizations)
genotype
•Columbia-0 •pmr4-1
pathogen isolates
•uninoculated •inoculated

112/112 Experiment AT4 Arabidopsis thaliana gene expression during floral transition and early flower development
Submitter: Lishuang Shen
Head of Lab: Coordinator: Prof Lutz Nover
Experiment Factors: developmental stage, genotype, organism part
GeneChip Type: ATH1-121501
Experiment design (40 hybridizations)
genotype
•Col-0 wildtype with an AG::GUS reporter •Ler with an AG::GUS reporter •co (CS175) •ft (CS184) •lfy-12
organism part
•apical region
developmental stage
•0 day LD •3 day LD •5 day LD •7 day LD

 
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