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Experiment Search Results


Barley1
1/58 Experiment BB108 Expression analysis of gene silenced barley to identify the function of a novel LRR-RLK (leucine-rich repeat receptor-like kinase)
Submitter: David L Parrott
Head of Lab: Andreas M Fischer
Experiment Factors: treatment
GeneChip Type: Barley1
Experiment design (12 hybridizations)
treatment
•Untreated Control •Empty Virus (no inserted plant sequences) •Rbaal VIGS •Co-silencing (Rbaal + PDS)

2/58 Experiment BB106 Barley Germination and Seedling Growth Time Course
Submitter: PLEXdb Curator
Head of Lab: Yong-qiang An
Experiment Factors: developmental stage name
GeneChip Type: Barley1
Experiment design (18 hybridizations)
developmental stage name
•stage S0 •stage S1 •stage S2 •stage S3 •stage S4 •stage S5

3/58 Experiment BB105 Transcriptome analysis of the barley fast neutron mutants nec3
Submitter: PLEXdb Curator
Head of Lab: Nils Rostoks
Experiment Factors: genotype
GeneChip Type: Barley1
Experiment design (6 hybridizations)
genotype
•FN362 •FN363 •Steptoe(wt)

4/58 Experiment BB104 Diurnal expression data from developing barley caryopses
Submitter: PLEXdb Curator
Head of Lab: Elke Mangelsen
Experiment Factors: time
GeneChip Type: Barley1
Experiment design (12 hybridizations)
time
•1h(dark) •9h(dark) •10h(light) •17h(light) •20h(light) •23h(light)

5/58 Experiment BB103 Microarray data from barley aleurone
Submitter: PLEXdb Curator
Head of Lab: Yong-Qiang Charles An
Experiment Factors: compound, genotype
GeneChip Type: Barley1
Experiment design (15 hybridizations)
compound
•untreated •GA •ABA •GA plus ABA
genotype
•control •sln1 mutant

6/58 Experiment BB102 Heat stress expression data from developing barley caryopses
Submitter: PLEXdb Curator
Head of Lab: Elke Mangelsen
Experiment Factors: stress condition, time
GeneChip Type: Barley1
Experiment design (12 hybridizations)
stress condition
•control •heat stress
time
•0.5 hrs •3 hrs •6 hrs

7/58 Experiment BB101 Transcript profiling of Bln1 silenced plants (BSMV-VIGS) relative to empty vector and buffer treated controls in barley-powdery mildew interactions
Submitter: Greg S Fuerst
Head of Lab: Roger P Wise, USDA-ARS
Experiment Factors: genotype, treatedoruntreated, treatment
GeneChip Type: Barley1
Experiment design (60 hybridizations)
genotype
•Clansman (Mla13) •HOR11358 (Mla9)
treatedoruntreated
•Inoc. w/ Bgh 5874 •Non-Inoc.
treatment
•Mock (Buffer Control) •BSMV:00 •BSMV:Bln1[248]

8/58 Experiment BB95 Long term cold responses in a winter barley
Submitter: Aaron G Greenup
Head of Lab: Ben Trevaskis
Experiment Factors: treatment
GeneChip Type: Barley1
Experiment design (6 hybridizations)
treatment
•Non-vernalized •Post-vernalized

9/58 Experiment BB94 Short and long term cold responses in a winter barley
Submitter: Aaron G Greenup
Head of Lab: Ben Trevaskis
Experiment Factors: treatment
GeneChip Type: Barley1
Experiment design (12 hybridizations)
treatment
•Non-vernalized •Short-term cold •Vernalized •1 day post-vernalized

10/58 Experiment BB93 Over-expression of ODDSOC2 in Golden Promise
Submitter: Aaron G Greenup
Head of Lab: Ben Trevaskis
Experiment Factors: genotype
GeneChip Type: Barley1
Experiment design (6 hybridizations)
genotype
•Wild-Type •Over-expression

11/58 Experiment BB92 Transcript profiling of local and adjacent leaf responses in barley following inoculation with Pseudomonas syringae
Submitter: Graham Robert David McGrann
Head of Lab: Lesley Boyd
Experiment Factors: tissue type name, treatment
GeneChip Type: Barley1
Experiment design (12 hybridizations)
tissue type name
•Local •Adjacent
treatment
•Inoculated •Control

12/58 Experiment BB91 Transcriptome analysis of a breeding program pedigree
Submitter: Maria Muñoz
Head of Lab: Gary J. Muehlbauer
Experiment Factors: genotype, time
GeneChip Type: Barley1
Experiment design (90 hybridizations)
genotype
•Bonanza •Cree •Dickson •Excel •Lacey •M1 •M44 •M46 •M55 •M66 •M78 •Manker •Morex •Robust •Stander
time
•0 days •3 days

13/58 Experiment BB89 Gene expression in the barley spike during drought stress
Submitter: Tilahun Abebe
Head of Lab: Dr. Tilahun Abebe
Experiment Factors: stress condition, tissue type name
GeneChip Type: Barley1
Experiment design (24 hybridizations)
stress condition
•Control •Drought stress
tissue type name
•Lemma •Palea •Awn •Seed

14/58 Experiment BB88 Endophytic colonization of barley (Hordeum vulgare) roots by Pochonia chlamydosporia
Submitter: Eduardo Larriba Tornel
Head of Lab: Luis Vicente Lopez Llorca; Jose Martin Nieto
Experiment Factors: treated or untreated
GeneChip Type: Barley1
Experiment design (6 hybridizations)
treated or untreated
•control roots •inoculated whit Pochonia chlamydosporia

15/58 Experiment BB87 Expression data from malting barley seeds
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, treatment
GeneChip Type: Barley1
Experiment design (22 hybridizations)
genotype
•Morex •Legacy •Merit •Harrington
treatment
•ungerminated •steeped •1d •4d •kilned

16/58 Experiment BB86 Expression data from barley germinating grains (Part 2 of 2)
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: organism part name, time
GeneChip Type: Barley1
Experiment design (16 hybridizations)
organism part name
•endosperm •embryo
time
•0 hrs •24 hrs •48 hrs •72 hrs

17/58 Experiment BB85 Expression data from barley maturing grains (Part 1 of 2)
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: organism part name, time
GeneChip Type: Barley1
Experiment design (16 hybridizations)
organism part name
•pericarp •endosperm •embryo
time
•4 DAF •8 DAF •16 DAF •25 DAF

18/58 Experiment BB84 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, time
GeneChip Type: Barley1
Experiment design (35 hybridizations)
genotype
•Martin •HS41-1 •Moroc9-75
time
•0 days •1 days •3 days •5 days

19/58 Experiment BB83 Mercury toxicity in barley roots
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: treatment
GeneChip Type: Barley1
Experiment design (6 hybridizations)
treatment
•control •mercury

20/58 Experiment BB82 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
Submitter: PLEXdb Curator
Head of Lab: Tim Close
Experiment Factors: stress condition
GeneChip Type: Barley1
Experiment design (6 hybridizations)
stress condition
•control •mannitol

21/58 Experiment BB81 Low temperature stress in cv. Dicktoo
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: cold stress
GeneChip Type: Barley1
Experiment design (12 hybridizations)
cold stress
•control •chilling •subzero •deacclimation

22/58 Experiment BB80 ABA experiment
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: ABA treatment
GeneChip Type: Barley1
Experiment design (9 hybridizations)
ABA treatment
•ABA_control •ABA_early •ABA_late

23/58 Experiment BB79 P. aeruginosa virulent factor to barley
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: pathogen infection
GeneChip Type: Barley1
Experiment design (3 hybridizations)
pathogen infection
•PAO1 •PA5021 •control

24/58 Experiment BB78 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, organism part name, stress condition
GeneChip Type: Barley1
Experiment design (24 hybridizations)
stress condition
•salt •control
genotype
•Golden Promise •Maythorpe
organism part name
•root •shoot

25/58 Experiment BB77 Barley single feature polymorphisms and drought stress gene expression
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, stress condition
GeneChip Type: Barley1
Experiment design (21 hybridizations)
genotype
•Barke •Morex •Steptoe •OWB_Dominant •OWB_Recessive
stress condition
•Unstressed •Drought_Stressed •Pooled_Stressed_Unstressed

26/58 Experiment BB76 Structural and functional characterization of a winter malting barley
Submitter: Maria Muñoz
Head of Lab: Gary J. Muehlbauer
Experiment Factors: genotype, time
GeneChip Type: Barley1
Experiment design (12 hybridizations)
genotype
•88Ab536 •Morex
time
•0 days •3 days

27/58 Experiment BB75 Response of barley roots during the nonhost interaction with the plasmodiophorid virus vector Polymyxa betae
Submitter: Graham Robert David McGrann
Head of Lab: Effie Mutasa-Göttgens
Experiment Factors: pathogen isolates
GeneChip Type: Barley1
Experiment design (6 hybridizations)
pathogen isolates
•Mock inoculated control •Polymyxa betae

28/58 Experiment BB74 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
Submitter: Graham Robert David McGrann
Head of Lab: Effie Mutasa-Göttgens
Experiment Factors: pathogen isolates
GeneChip Type: Barley1
Experiment design (6 hybridizations)
pathogen isolates
•Mock •Polymyxa graminis

29/58 Experiment BB73 Comparative transcriptional profiling of organs of the barley spike
Submitter: Tilahun Abebe
Head of Lab: Tilahun Abebe
Experiment Factors: tissue type name
GeneChip Type: Barley1
Experiment design (12 hybridizations)
tissue type name
•Lemma •Palea •Awn •Seed

30/58 Experiment BB72 Blumeria graminis fsp hordei effects on translation initiation in compatible and incompatible barley.
Submitter: Jackson R Moeller
Head of Lab: Steve Whitham
Experiment Factors: genotype, pathogen infection, RNA fraction
GeneChip Type: Barley1
Experiment design (24 hybridizations)
genotype
•CI 16151 (Mla6) •CI 16151 m9472 (mla6)
pathogen infection
•inoculated with Bgh isolate 5874 (AVRa6) •non-inoculated
RNA fraction
•polysomal RNA •total RNA

31/58 Experiment BB71 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genetic line, Insect Infestation
GeneChip Type: Barley1
Experiment design (24 hybridizations)
genetic line
•lina •28-4 •hsp5 •kara
Insect Infestation
•with-aphid (R. padi) •without-aphid (R. padi)

32/58 Experiment BB65 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants
Submitter: jan t svensson
Head of Lab: Timothy J. Close
Experiment Factors: genotype, temperature
GeneChip Type: Barley1
Experiment design (30 hybridizations)
temperature
•3 C •20 C
genotype
•Wild type cv. Bonus •Xantha-b12 •Xantha-s46 •Albina-f17 •Albina-e16

33/58 Experiment BB64 Genetic regulation of gene expression of barley in response to stem rust (Pgt isolate TTKS)
Submitter: Roger P Wise
Head of Lab: Roger Wise
Experiment Factors: genetic line, treated or untreated
GeneChip Type: Barley1
Experiment design (166 hybridizations)
genetic line
•Q21861 •SM89010 •QxSM001 •QxSM002 •QxSM003 •QxSM005 •QxSM008 •QxSM010 •QxSM011 •QxSM013 •QxSM014 •QxSM015 •QxSM016 •QxSM017 •QxSM018 •QxSM019 •QxSM023 •QxSM026 •QxSM028 •QxSM029 •QxSM030 •QxSM031 •QxSM033 •QxSM034 •QxSM035 •QxSM036 •QxSM037 •QxSM038 •QxSM039 •QxSM041 •QxSM042 •QxSM043 •QxSM045 •QxSM046 •QxSM047 •QxSM048 •QxSM049 •QxSM050 •QxSM052 •QxSM054 •QxSM055 •QxSM056 •QxSM057 •QxSM058 •QxSM059 •QxSM060 •QxSM061 •QxSM062 •QxSM063 •QxSM065 •QxSM066 •QxSM067 •QxSM068 •QxSM069 •QxSM070 •QxSM073 •QxSM074 •QxSM075 •QxSM076 •QxSM077 •QxSM078 •QxSM079 •QxSM080 •QxSM082 •QxSM083 •QxSM084 •QxSM085 •QxSM086 •QxSM087 •QxSM088 •QxSM089 •QxSM090 •QxSM091 •QxSM093 •QxSM094 •QxSM095 •QxSM097
treated or untreated
•Inoculated - Pgt TTKS •Mock

34/58 Experiment BB63 Late response to boron toxicity in barley leaves
Submitter: tufan mehmet oz
Head of Lab: Prof. Dr. Huseyin Avni OKTEM & Prof. Dr. Meral YUCEL, haoktem@metu.edu.tr, meraly@metu.edu.tr
Experiment Factors: treated or untreated
GeneChip Type: Barley1
Experiment design (9 hybridizations)
treated or untreated
•Control (C) •5 mM B(OH)3 treatment (5B) •10 mM B(OH)3 treatment (10B)

35/58 Experiment BB62 Barley host response to the direct application of the trichothecene mycotoxin deoxynivalenol
Submitter: Stephanie A Gardiner
Head of Lab: Gary J. Muehlbauer
Experiment Factors: time, treated or untreated
GeneChip Type: Barley1
Experiment design (24 hybridizations)
time
•1 hai •12 hai •24 hai •48 hai
treated or untreated
•Deoxynivalenol •Water

36/58 Experiment BB61 Transcriptome analysis of wild barley (H. vulgare ssp spontaneum) after pathogen inoculation
Submitter: Ben Millett
Head of Lab: Gary Muehlbauer
Experiment Factors: time, treated or untreated
GeneChip Type: Barley1
Experiment design (48 hybridizations)
treated or untreated
•C. sativus (spot blotch) •water control •P. hordei (leaf rust) •oil control
time
•12 hrs •24 hrs •36 hrs •48 hrs

37/58 Experiment BB55 Mapping barley genes to chromosome arms by transcript profiling of wheat-barley ditelosomic chromosome addition lines
Submitter: Hatice Bilgic
Head of Lab: Gary Muehlbauer
Experiment Factors: genotype
GeneChip Type: Barley1
Experiment design (36 hybridizations)
genotype
•CS (Chinese Spring) •Betzes •1HS •2HS •3HS •3HL •4HS •4HL •5HS •5HL •7HS •7HL

38/58 Experiment BB54 Necrotic mutants in barley cv. Steptoe
Submitter: ling zhang
Experiment Factors: line
GeneChip Type: Barley1
Experiment design (15 hybridizations)
line
•nad1-1 •nad1-2 •nad1-3 •nad1-4 (FN242) •Steptoe

39/58 Experiment BB53 Functional Genomic Analysis Of Barley(Hordeum vulgare L.) Grain Protein Accumulation
Submitter: Aravind K Jukanti
Experiment Factors: developmental stage, genotype, tissue type
GeneChip Type: Barley1
Experiment design (24 hybridizations)
developmental stage
•14 days past anthesis •21 days past anthesis
genotype
•Karl •10-11 (NIL with high grain protein locus)
tissue type
•Leaves •Kernels

40/58 Experiment BB52 Transcriptome analysis of trichothecene-induced gene expression in barley
Submitter: Jayanand Boddu
Head of Lab: Gary J. Muehlbauer
Experiment Factors: time, Treated or untreated
GeneChip Type: Barley1
Experiment design (18 hybridizations)
time
•48 hai. •96 hai.
Treated or untreated
•WATER •MUTANT •WILD TYPE

41/58 Experiment BB50 Carbohydrate accumulation in barley leaves leads to senescence and protease gene upregulation
Submitter: David L Parrott
Head of Lab: Andreas Fischer
Experiment Factors: time, Treated or untreated
GeneChip Type: Barley1
Experiment design (21 hybridizations)
time
•0 Day •4 Day •8 Day
Treated or untreated
•untreated control •girdled •shift-girdled control

42/58 Experiment BB49 barley stem rust interaction
Submitter: ling zhang
Experiment Factors: genotype, pathogen isolates, time
GeneChip Type: Barley1
Experiment design (68 hybridizations)
genotype
•GP •Rpg1 transgenic
pathogen isolates
•mcc •qcc
time
•0 •6 •12 •18 •24 •36

43/58 Experiment BB47 Transcriptome analysis of Bowman vs 4 tillering mutants at 4 developmental stages
Submitter: Seungho Cho
Head of Lab: Muehlbauer
Experiment Factors: developmental stage, genotype
GeneChip Type: Barley1
Experiment design (60 hybridizations)
developmental stage
•young seedling •crown •immature inflorescence •immature embryo
genotype
•Bowman •als-Bowman •lnt-Bowman •cul2-Bowman •cul4-Bowman

44/58 Experiment BB46 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
Submitter: Roger P Wise
Head of Lab: Roger P Wise
Experiment Factors: genotype, pathogen isolates, time
GeneChip Type: Barley1
Experiment design (72 hybridizations)
genotype
•Mla6 •11542
pathogen isolates
•5874 •K1
time
•0 •8 •16 •20 •24 •32

45/58 Experiment BB28 Expression profiling of Morex and rpr1 mutant
Submitter: ling zhang
Experiment Factors: genotype
GeneChip Type: Barley1
Experiment design (6 hybridizations)
genotype
•Morex •rrp1

46/58 Experiment BB22 Developing seeds of M955 low phytic acid barley 7 days after anthesis
Submitter: David E Bowen
Head of Lab: Edward Souza
Experiment Factors: genotype, year
GeneChip Type: Barley1
Experiment design (9 hybridizations)
genotype
•M955 LPA sib-selection •M955 WT sib-selection
year
•2003 •2004

47/58 Experiment BB21 Genetics of gene expression in barley
Submitter: Arnis Druka
Experiment Factors: genetic line
GeneChip Type: Barley1
Experiment design (41 hybridizations)
genetic line
•SM004 •SM007 •SM012 •SM013 •SM022 •SM024 •SM027 •SM041 •SM043 •SM044 •SM046 •SM061 •SM063 •SM073 •SM074 •SM079 •SM085 •SM088 •SM089 •SM116 •SM130 •SM135 •SM136 •SM140 •SM141 •SM146 •SM152 •SM155 •SM160 •SM167 •SM169 •SM173 •SM177 •SM184 •SM200 •Steptoe •Morex

48/58 Experiment BB20 Genotype-dependent gene expression in barley
Submitter: Arnis Druka
Experiment Factors: genotype
GeneChip Type: Barley1
Experiment design (24 hybridizations)
genotype
•Morex •Steptoe •OWB REC •OWB DOM •Barke •Haruna Nijo •Golden Promise •Optic

49/58 Experiment BB16 Steptoe x Morex seedling leaf comparison
Submitter: Roger P Wise
Head of Lab: Roger Wise
Experiment Factors: genotype
GeneChip Type: Barley1
Experiment design (6 hybridizations)
genotype
•Steptoe •Morex

50/58 Experiment BB10 Transcription profiling of barley plants containing variants of Mla1 and Mla6 powdery mildew resistance genes
Submitter: Rico A. Caldo
Head of Lab: Roger P Wise
Experiment Factors: genotype, time, Treated or untreated
GeneChip Type: Barley1
Experiment design (144 hybridizations)
genotype
•Mla1 •m508 •Mla6 •9472
time
•0 •8 •16 •20 •24 •32
Treated or untreated
•Inoculated •Non-inoculated

51/58 Experiment BB9 Barley cv Morex inoculated with Fusarium graminearum and water as mock control
Submitter: Warren Kruger
Head of Lab: Gary J. Muehlbauer
Experiment Factors: time, Treated or untreated
GeneChip Type: Barley1
Experiment design (44 hybridizations)
time
•24 •48 •72 •96 •144
Treated or untreated
•WATER •Fusarium

52/58 Experiment BB8 Microarray of barley genes in wheat-barley chromosome addition lines
Submitter: Seungho Cho
Head of Lab: Gary J. Muehlbauer
Experiment Factors: genotype
GeneChip Type: Barley1
Experiment design (33 hybridizations)
genotype
•chr2H •chr2HL •chr3H •chr4H •chr5H •chr6H •chr6HL •chr6HS •chr7H •Betzes •Chinese Spring

53/58 Experiment BB7 mlo5-mediated resistance responses in barley
Submitter: Achim Fischer
Experiment Factors: disease type, genotype
GeneChip Type: Barley1
Experiment design (4 hybridizations)
disease type
•Control •Treated (Pathogen Infection)
genotype
•Mlo •mlo5

54/58 Experiment BB5 A Ca2+/calmodulin-dependent protein kinase required for symbiotic nodule development: Gene identification by transcript-based cloning
Submitter: james e hadfield
Experiment Factors: genotype
GeneChip Type: Barley1
Experiment design (4 hybridizations)
genotype
•rar1-2 (mutant) •Sultan 5 (wild type)

55/58 Experiment BB4 Mla-specified Transcriptional Responses in Barley-Powdery Mildew Interactions
Submitter: Rico A. Caldo
Head of Lab: Roger P Wise
Experiment Factors: genotype, pathogen isolates, time
GeneChip Type: Barley1
Experiment design (108 hybridizations)
genotype
•CI 16137 (Mla1) •CI 16151 (Mla6) •CI 16155 (Mla13)
pathogen isolates
•Bgh 5874 •Bgh K1
time
•0 hai •8 hai •16 hai •20 hai •24 hai •32 hai

56/58 Experiment BB3 Transcription patterns during barley development
Submitter: Arnis Druka
Experiment Factors: genotype, tissue type
GeneChip Type: Barley1
Experiment design (63 hybridizations)
genotype
•Morex •Golden Promise
tissue type
•germinating seed, coleoptyle •germinating seed, radicle •germinating seed, embryo •seedling, root •seedling, crown •seedling, leaf •immature, inflorescence •floral bracts, before anthesis •pistil, before anthesis •anthers, before anthesis •5 DAP caryopsis •10 DAP caryopsis •16 DAP caryopsis •22 DAP embryo •22 DAP endosperm

57/58 Experiment BB2 Expression profiling of wild type and mutants of Sultan 5 (Mla12) barley cultivar
Submitter: Rico A. Caldo
Head of Lab: Roger P Wise
Experiment Factors: genotype, time, Treated or untreated
GeneChip Type: Barley1
Experiment design (180 hybridizations)
genotype
•Mla12 •m66 •m82 •m100 •rom1
time
•0hai •8hai •16hai •20hai •24hai •32hai
Treated or untreated
•inoculated •non-inoculated

58/58 Experiment BB1 Cross-species Detection in Barley1 GeneChip Array
Submitter: Rico A. Caldo
Head of Lab: Roger P Wise
Experiment Factors: species
GeneChip Type: Barley1
Experiment design (12 hybridizations)
species
•Barley •Wheat •Oat •Sorghum •Corn •Rice

 
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