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Experiment Search Results


Rice57k
1/101 Experiment OS102 Expression data from IR64 rice transformed with 35S::OsPSTOL1 gene
Submitter: PLEXdb Curator
Head of Lab: Sigrid Heuer
Experiment Factors: genotype, nutrient
GeneChip Type: Rice57k
Experiment design (8 hybridizations)
genotype
•transgenic •non-transgenic
nutrient
•P deficient •P fertilized

2/101 Experiment OS101 Comparison of transcriptome profile between wild-type and dao mutant plants
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
genotype
•wildtype •dao mutant

3/101 Experiment OS100 Expression data from OsRP1L1-overexpressing plant leaf in japonica rice (cv. Ishikari-shiroge (I-S))
Submitter: PLEXdb Curator
Head of Lab: Jianping Chen
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
genotype
•OsRP1L1 overexpressing •Wild type

4/101 Experiment OS99 Comparative Transcriptomes Profiling of Photoperiod-sensitive Male Sterile Rice Nongken 58S between Short Day and Long Day Condition
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: developmental stage name, photoperiod
GeneChip Type: Rice57k
Experiment design (12 hybridizations)
photoperiod
•LD •SD
developmental stage name
•pistil/stamen •glume pds

5/101 Experiment OS98 Nitrogen-efficient rice over-expressing alanine aminotransferase
Submitter: PLEXdb Curator
Head of Lab: Perrin Hudson Beatty
Experiment Factors: genetic line, organism part name
GeneChip Type: Rice57k
Experiment design (32 hybridizations)
organism part name
•shoot •root
genetic line
•wildtype-NB •AlaAT-ox-1/7 •AlaAT-ox-1/8 •AlaAT-ox-3/8

6/101 Experiment OS97 Comparison of transcriptome profile between wild-type and Epi-df mutant plants
Submitter: PLEXdb Curator
Head of Lab: Li Zhi-Kang
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
genotype
•WT •Epi-df

7/101 Experiment OS96 Expression data of one-week-old rice seedlings exposed to Pi-deficient solution for 6, 24, 48, 72 hours
Submitter: PLEXdb Curator
Head of Lab: Wen-Hao Zhang
Experiment Factors: nutrient
GeneChip Type: Rice57k
Experiment design (10 hybridizations)
nutrient
•Pi sufficient control •Pi deficient 6 hrs •Pi deficient 24 hrs •Pi deficient 48 hrs •Pi deficient 72 hrs

8/101 Experiment OS95 Genome-wide gene expression profiling of rice Zhonghua11 and ila1 lamina joint
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (4 hybridizations)
genotype
•WT ZH11 •mutant ila1

9/101 Experiment OS94 Gene expression in mature pollen and sperm cells versus young seedling as a vegetative sporophyte reference control
Submitter: PLEXdb Curator
Head of Lab: Scott D Russell
Experiment Factors: developmental stage name
GeneChip Type: Rice57k
Experiment design (9 hybridizations)
developmental stage name
•seedling V3 stage •pollen at anthesis •sperm at anthesis

10/101 Experiment OS93 Gene Expression Profiling during Male Gametophyte Development in Rice
Submitter: PLEXdb Curator
Head of Lab: Sheng-hua Wang
Experiment Factors: developmental stage name
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
developmental stage name
•UNM •BCP •TCP

11/101 Experiment OS92 Rice gene global expression during nonhost interaction with Blumeria graminis f. sp. hordei (Bgh)
Submitter: PLEXdb Curator
Head of Lab: Pamela Abbruscato
Experiment Factors: pathogen infection
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
pathogen infection
•Bgh •mock

12/101 Experiment OS91 Rice gene global expression analysis upon inoculation with different Magnaporthe isolates
Submitter: PLEXdb Curator
Head of Lab: Pamela Abbruscato
Experiment Factors: pathogen inoculation
GeneChip Type: Rice57k
Experiment design (15 hybridizations)
pathogen inoculation
•BR29 •BR32 •CL367 •FR13 •mock

13/101 Experiment OS90 Expression data from rice seeds during low temperature treatment
Submitter: PLEXdb Curator
Head of Lab: Hong-Wei Xue
Experiment Factors: cultivar, treatment
GeneChip Type: Rice57k
Experiment design (16 hybridizations)
cultivar
•Hanfeng •Zhonghua11
treatment
•4DAF-2d cold •4DAF-2d normal •4DAF •10DAF-2d cold •10 DAF-2d normal •10DAF

14/101 Experiment OS89 Expression data from rice embryo and endosperm development
Submitter: PLEXdb Curator
Head of Lab: Hong-Wei Xue
Experiment Factors: developmental stage name, tissue type name
GeneChip Type: Rice57k
Experiment design (14 hybridizations)
tissue type name
•ovary •embryo •endosperm
developmental stage name
•0 DAF •3 DAF •9 DAF •12 DAF •16 DAF

15/101 Experiment OS88 Gene expression profiling of rice embryogenic calli after Agrobacterium infection (Part 2-probe selection)
Submitter: PLEXdb Curator
Head of Lab: Yongjun Lin
Experiment Factors: genomic DNA
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
genomic DNA
•Nipponbare gDNA •Zhensan gDNA

16/101 Experiment OS87 Gene expression profiling of rice embryogenic calli after Agrobacterium infection (part 1-gene expression)
Submitter: PLEXdb Curator
Head of Lab: Yongjun Lin
Experiment Factors: cultivar, time
GeneChip Type: Rice57k
Experiment design (30 hybridizations)
cultivar
•Nipponbare •Zhenshan 97
time
•0 hrs •1 hrs •6 hrs •12 hrs •24 hrs

17/101 Experiment OS86 Expression data from LRK1 060615 transgenic rice and control 9311
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (2 hybridizations)
genotype
•control •LRK1 transgenic

18/101 Experiment OS85 Expression data from infected (Xanthomonas oryzae pv. Oryzae (P10)) leaf in japonica rice (cv. Y73)
Submitter: PLEXdb Curator
Head of Lab: Jianping Chen
Experiment Factors: pathogen inoculation
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
pathogen inoculation
•Xoo •mock

19/101 Experiment OS84 Differential expression for salt and drought stress
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: strain, stress condition
GeneChip Type: Rice57k
Experiment design (16 hybridizations)
strain
•drought sensitive •drought tolerant •salt sensitive •salt tolerant
stress condition
•drought stress •salt stress •control

20/101 Experiment OS83 Expression profile of high yielding rice introgression line
Submitter: PLEXdb Curator
Head of Lab: Sarla Neelamraju
Experiment Factors: developmental stage name, genetic line
GeneChip Type: Rice57k
Experiment design (12 hybridizations)
genetic line
•KMR3 •IL50-7
developmental stage name
•flag leaf •panicle

21/101 Experiment OS82 Expression data from rice after brown planthopper attack
Submitter: PLEXdb Curator
Head of Lab: Xue-Xia Miao
Experiment Factors: cultivar, time
GeneChip Type: Rice57k
Experiment design (18 hybridizations)
cultivar
•RHT •TN1
time
•0 hrs •8 hrs •24 hrs

22/101 Experiment OS81 Global gene expression profiles of Oryza sativa wild type Nipponbare and mutant coi1-13
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
genotype
•Nipponbare •coi1-13

23/101 Experiment OS80 Express data from rice endosperm
Submitter: PLEXdb Curator
Head of Lab: Zhaohua Peng
Experiment Factors: developmental stage name
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
developmental stage name
•endosperm •leaf (control)

24/101 Experiment OS79 A single functional blast resistance gene Pi54 activates complex defense mechanism in Rice
Submitter: PLEXdb Curator
Head of Lab: Dr. Tilak Raj Sharma
Experiment Factors: genotype, pathogen inoculation
GeneChip Type: Rice57k
Experiment design (8 hybridizations)
genotype
•TP •TP-Pi54
pathogen inoculation
•control •inoculated

25/101 Experiment OS78 Expression data from transgenic rice with anti-OsPDCD5
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genetic line, treatment
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
genetic line
•nontransgenic •transgenic
treatment
•normal (No NaCl) •20mins NaCl •3 hrs NaCl

26/101 Experiment OS77 Expression data from rice varieties IRAT109 and ZS97 for drought stress treatment in flag leaves
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, treatment
GeneChip Type: Rice57k
Experiment design (16 hybridizations)
genotype
•IRAT109 •ZS97
treatment
•no stress •slight •moderate •severe

27/101 Experiment OS76 Differential expression for rice-gall midge interaction
Submitter: PLEXdb Curator
Head of Lab: J. S. Bentur
Experiment Factors: insect infestation
GeneChip Type: Rice57k
Experiment design (9 hybridizations)
insect infestation
•control •GMB1 •GMB4M

28/101 Experiment OS75 DNA microarray data from transgenic rice Huahui 1 (HH1) and its parent Minghui 63 (MH63)
Submitter: PLEXdb Curator
Head of Lab: Zhi Liu
Experiment Factors: treatment
GeneChip Type: Rice57k
Experiment design (60 hybridizations)
treatment
•HH1-30 •MH63-30 •HH1-60 •MH63-60 •HH1-75 •MH63-75 •HH1-90 •MH63-90 •HH1-HT •MH63-HT •HH1-LT •MH63-LT •HH1-Jxol •MH63-Jxol •HH1-Pxo99 •MH63-Pxo99 •HH1-Rs105 •MH63-Rs105 •HH1-Xv5 •MH63-Xv5

29/101 Experiment OS74 DNA microarray data from transgenic rice KMD and its parent XS11
Submitter: PLEXdb Curator
Head of Lab: Zhi Liu
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
genotype
•KMD •XS11

30/101 Experiment OS73 Expression comparasion of rice seedlings of Osabl1 mutant and WT under ABA treatment
Submitter: PLEXdb Curator
Head of Lab: Dr. Hong-Wei Xue
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (4 hybridizations)
genotype
•WT •Osabl1

31/101 Experiment OS72 Expression data from PSARK::IPT and wildtype rice plants
Submitter: PLEXdb Curator
Head of Lab: Eduardo Blumwald
Experiment Factors: genotype, stress condition
GeneChip Type: Rice57k
Experiment design (12 hybridizations)
genotype
•WT •PSARK::IPT
stress condition
•well watered •water stressed

32/101 Experiment OS71 Expression data from shoot bases of rice seedling after gravistimulation
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: organism part name, time
GeneChip Type: Rice57k
Experiment design (15 hybridizations)
organism part name
•control •shoot base upper •shoot base lower
time
•0 hrs •.50 hrs •6 hrs

33/101 Experiment OS70 affy_meloidogyne_rice2-Oryza sativa genes expressed in the early compatible interaction with root-knot nematode
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: pathogen inoculation
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
pathogen inoculation
•control •inoculated

34/101 Experiment OS69 Oryza sativa genes expressed in the early compatible interaction with root-knot nematode (affy_meloidogyne_rice)
Submitter: PLEXdb Curator
Head of Lab: Claire Lurin
Experiment Factors: time
GeneChip Type: Rice57k
Experiment design (9 hybridizations)
time
•0 hpi •48 hpi •96 hpi

35/101 Experiment OS68 Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice
Submitter: PLEXdb Curator
Head of Lab: Pascal Gantet
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
genotype
•WT •crl1 mutant

36/101 Experiment OS67 Expression data from transgenic rice with OsEATB
Submitter: PLEXdb Curator
Head of Lab: Jinshui Yang
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (2 hybridizations)
genotype
•nontransgenic •transgenic

37/101 Experiment OS66 Comparison of transcriptional responses of two susceptible rice cultivars to strains of Xanthomonas oryzae
Submitter: Frank White
Head of Lab: Frank White
Experiment Factors: cultivar, strain
GeneChip Type: Rice57k
Experiment design (65 hybridizations)
cultivar
•Nipponbare •IR24
strain
•PXO99A •PXO99AME7 •PXO99AME5 •MOCK •NO TREATMENT •T7174 •PXO86 •BLS303 •PXO99AME1 •PXO99AME2 •PXO99A-2

38/101 Experiment OS65 Whole-Genome Analysis of SSB Larvae Infestation Regulated Rice Genes
Submitter: PLEXdb Curator
Head of Lab: Guoxin Zhou
Experiment Factors: insect infestation
GeneChip Type: Rice57k
Experiment design (3 hybridizations)
insect infestation
•control •SSB infested

39/101 Experiment OS64 Transcriptome Phase Distribution Analysis Reveals Diurnal Regulated Biological Processes and Key Pathways in Rice Flag Leaves and Seedling Leaves
Submitter: PLEXdb Curator
Head of Lab: Yongbiao Xue
Experiment Factors: developmental stage name, time
GeneChip Type: Rice57k
Experiment design (40 hybridizations)
developmental stage name
•Seedling leaf •Flag Leaf
time
•Time 1 •Time 2 •Time 3 •Time 4 •Time 5 •Time 6 •Time 7 •Time 8 •Time 9 •Time 10

40/101 Experiment OS63 genome-wide gene expression profiling of rice pollen in defferent developmetn stages
Submitter: PLEXdb Curator
Head of Lab: Tai Wang
Experiment Factors: developmental stage name
GeneChip Type: Rice57k
Experiment design (24 hybridizations)
developmental stage name
•callus cell •leaf •root •uninucleate microspores •bicellular pollen •tricellular pollen •mature pollen •germinated pollen

41/101 Experiment OS62 Analysis of anther transcriptomes to identify genes contributing to meiosis and male gametophyte development in rice
Submitter: PLEXdb Curator
Head of Lab: Sanjay Kapoor
Experiment Factors: developmental stage name
GeneChip Type: Rice57k
Experiment design (12 hybridizations)
developmental stage name
•pre-meiotic anther •meiotic anther •anther(single celled pollen) •anther(trinucleate pollen)

42/101 Experiment OS61 Expression analysis of genes in the lamina joint of lc1 mutant compared with that of wild-type
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (4 hybridizations)
genotype
•wild type •lc1 mutant

43/101 Experiment OS60 A global analysis of QTLs for expression variations in rice shoot at early seedling stage
Submitter: PLEXdb Curator
Head of Lab: Qifa Zhang
Experiment Factors: genetic line
GeneChip Type: Rice57k
Experiment design (226 hybridizations)
genetic line
•001 •004 •005 •006 •007 •009 •012 •013 •014 •015 •016 •017 •018 •019 •020 •022 •023 •026 •027 •030 •039 •042 •047 •048 •053 •054 •059 •062 •066 •068 •071 •072 •077 •080 •081 •082 •083 •084 •086 •087 •089 •090 •095 •099 •101 •103 •105 •106 •109 •111 •112 •114 •118 •123 •125 •129 •131 •133 •134 •137 •139 •140 •141 •145 •147 •149 •150 •151 •152 •154 •155 •156 •159 •160 •161 •162 •163 •164 •165 •167 •169 •173 •175 •178 •180 •183 •184 •185 •186 •187 •191 •192 •193 •195 •197 •198 •199 •203 •204 •205 •206 •209 •210 •215 •216 •219 •232 •236 •238 •241 •Zhenshan 97 •Minghui 63

44/101 Experiment OS58 Expression data from rice seedlings of wild type and the CHR729 mutant
Submitter: PLEXdb Curator
Head of Lab: Dao-Xiu Zhou
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
genotype
•CHR729 T-DNA mutant •wild type

45/101 Experiment OS57 Identification of Rhizome-Specific Genes by Genome-wide Differential Expression Analysis in Oryza longistaminata
Submitter: PLEXdb Curator
Head of Lab: Binying Fu and Zhikang L
Experiment Factors: tissue type name
GeneChip Type: Rice57k
Experiment design (15 hybridizations)
tissue type name
•shoot tip •rhizome tip •rhizome internodes •shoot internodes •young leaf

46/101 Experiment OS56 Expression data from field droughted rice plants
Submitter: PLEXdb Curator
Head of Lab: Adam H Price
Experiment Factors: cultivar, stress condition
GeneChip Type: Rice57k
Experiment design (12 hybridizations)
stress condition
•control •drought
cultivar
•Azucena •Bala

47/101 Experiment OS55 Rice leaf transcriptome from 6 week old plants
Submitter: PLEXdb Curator
Head of Lab: Pamela C. Ronald
Experiment Factors: cultivar
GeneChip Type: Rice57k
Experiment design (3 hybridizations)
cultivar
•Kitaake

48/101 Experiment OS54 Genome-wide gene expression of rice cultivar Gui-630 (Indica) X Taiwanjing (Japonica) and mutant lemmata (lem) panicle
Submitter: PLEXdb Curator
Head of Lab: Yongbiao Xue
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
genotype
•lemmata mutant •wildtype

49/101 Experiment OS53 Transgenic rice line carrying the maize resistance gene Rxo1 to Xanthomonas oryzae pv. oryzicola
Submitter: PLEXdb Curator
Head of Lab: Zhi-Kang Li
Experiment Factors: genotype, pathogen inoculation
GeneChip Type: Rice57k
Experiment design (12 hybridizations)
genotype
•transgenic(9804-Rxo1) •9804
pathogen inoculation
•Xoc inoculated •control

50/101 Experiment OS52 Microarray data from aerial tissue of submergence tolerant M202(Sub1) and intolerant M202
Submitter: PLEXdb Curator
Head of Lab: Julia Bailey-Serres
Experiment Factors: genotype, stress condition
GeneChip Type: Rice57k
Experiment design (8 hybridizations)
genotype
•M202 •M202(Sub1)
stress condition
•control •submerged

51/101 Experiment OS51 bulked RILs with high and low grain number per panicle derived from 2 cultivars at panicle primordia stage
Submitter: PLEXdb Curator
Head of Lab: Nagendra K. Singh
Experiment Factors: genetic line
GeneChip Type: Rice57k
Experiment design (4 hybridizations)
genetic line
•bulkRIL(high grain no) •bulkRIL(low grain no)

52/101 Experiment OS50 Transcription profiling of parental lines and bulked salt sensitive and salt tolerant RILs derived from 2 rice varieties
Submitter: PLEXdb Curator
Head of Lab: Nagendra K. Singh
Experiment Factors: genetic line, stress condition
GeneChip Type: Rice57k
Experiment design (16 hybridizations)
genetic line
•MI48 •CSR27 •Bulk tolerant •Bulk sensitive
stress condition
•control •salt stressed

53/101 Experiment OS49 Whole genome transcriptome profiling of Pusa 1266 and Pusa Basmati 1 in panicle primordia stage
Submitter: PLEXdb Curator
Head of Lab: Nagendra Singh
Experiment Factors: cultivar
GeneChip Type: Rice57k
Experiment design (4 hybridizations)
cultivar
•Pusa1266 •Pusa Basmati

54/101 Experiment OS48 Temporal regulatory role of miR156 during leaf ontogenesis
Submitter: PLEXdb Curator
Head of Lab: Lizhong Xiong
Experiment Factors: genotype, tissue type name
GeneChip Type: Rice57k
Experiment design (12 hybridizations)
tissue type name
•younger leaves(L1) •older leaves(L4-5)
genotype
•miR156 •wildtype

55/101 Experiment OS47 Gene expression in leaf blades of the rice Os-LBD37 overexpressor line RK16331-13
Submitter: PLEXdb Curator
Head of Lab: Kazuki Saito
Experiment Factors: genetic line
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
genetic line
•empty vector control •Os-LBD37 overexpressor

56/101 Experiment OS46 Rice expression atlas: Plant reproductive process
Submitter: PLEXdb Curator
Head of Lab: Nori Kurata
Experiment Factors: tissue type name
GeneChip Type: Rice57k
Experiment design (98 hybridizations)
tissue type name
•Anther at An1 •Anther at Mei1 •Anther at M1 •Anther at M2 •Anther at M3 •Anther at P1 •Anther at P2 •Anther at P3 •Stigma control •Ovary control •Pollinating stigma •Pollinating ovary •Pollen tube growth •Fertilization •Zygote formation •Embryosac control_bottom •embryosac_bottom 1 DAP •embryosac_bottom 2 DAP •embryosac_bottom 3 DAP •embryosac_bottom 4 DAP •Embryosac control_top •embryosac_top 1 DAP •embryosac_top 2 DAP •embryosac_top 3 DAP •embryosac_top 4 DAP •Growing callus •Regenerating callus 2 days •Regenerating callus 4 days •Regenerating callus 6 days •Regenerating callus 8 days •Root •Shoot •Young leaf

57/101 Experiment OS45 Rice expression atlas (4): Vegetative tissues
Submitter: PLEXdb Curator
Head of Lab: Nori Kurata
Experiment Factors: tissue type name
GeneChip Type: Rice57k
Experiment design (25 hybridizations)
tissue type name
•growing callus •regenerating callus 2d •regenerating callus 4d •regenerating callus 6d •regenerating callus 8d •root •shoot •young leaf

58/101 Experiment OS44 Rice expression atlas (3): Early embryogenesis
Submitter: PLEXdb Curator
Head of Lab: Nori Kurata
Experiment Factors: organism part name, time
GeneChip Type: Rice57k
Experiment design (27 hybridizations)
organism part name
•embryo sac bottom •embryo sac top
time
•control •1 DAP •2 DAP •3 DAP •4 DAP

59/101 Experiment OS43 Rice expression atlas (2): Pollination - Fertilization
Submitter: PLEXdb Curator
Head of Lab: Nori Kurata
Experiment Factors: tissue type name
GeneChip Type: Rice57k
Experiment design (20 hybridizations)
tissue type name
•Stigma control •Ovary control •Pollinating stigma •Pollinating ovary •Pollen tube growth •Fertilization •Zygote formation

60/101 Experiment OS42 Rice expression atlas (1): Anther development
Submitter: PLEXdb Curator
Head of Lab: Nori Kurata
Experiment Factors: developmental stage name
GeneChip Type: Rice57k
Experiment design (26 hybridizations)
developmental stage name
•Anther An1 •Anther Mei1 •Anther M1 •Anther M2 •Anther M3 •Anther P1 •Anther P2 •Anther P3

61/101 Experiment OS41 Expression data from rice genotypes FL478 and IR29
Submitter: PLEXdb Curator
Head of Lab: Harkamal Walia
Experiment Factors: genotype, stress condition
GeneChip Type: Rice57k
Experiment design (11 hybridizations)
genotype
•FL478 •IR29
stress condition
•control •salt

62/101 Experiment OS40 Transcriptional profiling of Cellulase induced hypersensitive reaction like response in rice
Submitter: PLEXdb Curator
Head of Lab: Ramesh V. Sonti
Experiment Factors: compound
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
compound
•potassium phosphate buffer •Xoo cellulase

63/101 Experiment OS39 Comparsion of gene expression profile in polaris (pola) mutant lines and its POLARIS (POLA) wild-type at meiotic and ripening stages
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: developmental stage name, genotype
GeneChip Type: Rice57k
Experiment design (4 hybridizations)
genotype
•wild type •pola mutant •pola RNAi
developmental stage name
•meiotic stage •ripening stage

64/101 Experiment OS38 affy_xoo_rice-Transcriptomics-based identification of Xoo strain BAI3 Talc targets in rice
Submitter: PLEXdb Curator
Head of Lab: J. Sáez-Vásquez
Experiment Factors: pathogen inoculation
GeneChip Type: Rice57k
Experiment design (9 hybridizations)
pathogen inoculation
•Xoo(BAI3 delta talc) •mock •Xoo(BAI3)

65/101 Experiment OS37 Genome-wide temporal-spatial gene expression profiling of drought responsiveness in rice
Submitter: PLEXdb Curator
Head of Lab: Bin-Ying Fu and Zhi-Kang Li
Experiment Factors: developmental stage name, stress condition, tissue type name
GeneChip Type: Rice57k
Experiment design (36 hybridizations)
stress condition
•control •drought
tissue type name
•leaves •roots •panicle
developmental stage name
•tillering stage •panicle elongation stage •booting stage

66/101 Experiment OS36 Methanol is an endogenous elicitor molecule upon senescence of detached rice leaves
Submitter: PLEXdb Curator
Head of Lab: Kyoungwhan Back
Experiment Factors: compound
GeneChip Type: Rice57k
Experiment design (3 hybridizations)
compound
•water •MeOH

67/101 Experiment OS35 Temporal gene expression analyisis from rice root (cv. Nipponbare) infected with Magnaporthe oryzae strain Guy11
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: pathogen inoculation, time
GeneChip Type: Rice57k
Experiment design (12 hybridizations)
pathogen inoculation
•Mock •Guy11_inoculated
time
•2 dpi •4 dpi •6 dpi

68/101 Experiment OS34 Comparison of transcriptome profile between wild-type and dst mutant plants
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
genotype
•Wild_Type •dst

69/101 Experiment OS33 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (4 hybridizations)
genotype
•Wild Type •pheonix

70/101 Experiment OS32 Dissecting the developmental transcriptomes of rice
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: cultivar, organism part name
GeneChip Type: Rice57k
Experiment design (190 hybridizations)
cultivar
•Minghui63 •Zhenshan97
organism part name
•callus1 •callus2 •callus3 •callus4 •callus5 •callus6 •callus7 •callus8 •germinating_seed •plumule1 •radicle1 •plumule2 •radicle2 •seedling3 •seedling4 •seedling5 •shoot •root •leaf1 •sheath1 •leaf2 •sheath2 •panicle4 •stem1 •leaf3 •stem2 •panicle5 •palea/lemma •stamen •spikelet •endosperm1 •endosperm2 •endosperm3 •leaf4 •seedling1 •seedling2 •panicle1 •panicle2 •panicle3

71/101 Experiment OS31 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: compound1, compound2, organism part name
GeneChip Type: Rice57k
Experiment design (16 hybridizations)
organism part name
•Root •Shoot
compound1
•full_P •no_P
compound2
•full_Fe •no_Fe

72/101 Experiment OS30 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, stress condition
GeneChip Type: Rice57k
Experiment design (23 hybridizations)
genotype
•FL478 •IR29 •IR63731 •Pokkali
stress condition
•Control •Salt

73/101 Experiment OS29 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: cultivar
GeneChip Type: Rice57k
Experiment design (10 hybridizations)
cultivar
•Nipponbare •93-11

74/101 Experiment OS28 Rice seedling hormone treatment
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: treatment
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
treatment
•control •IAA treated •BAP treated

75/101 Experiment OS27 Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genetic line
GeneChip Type: Rice57k
Experiment design (9 hybridizations)
genetic line
•Transgenic line 4 •Transgenic line 22 •Wild-type

76/101 Experiment OS26 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (17 hybridizations)
genotype
•mutant_d1 •mutant_d256 •mutant_d1137 •mutant_d2943 •mutant_g282 •mutant_g650 •mutant_g6485 •mutant_g6489 •mutant_g6603 •mutant_g6686 •mutant_g6728 •mutant_g7534 •mutant_g9799 •mutant_g6989 •mutant_f1856 •mutant_f2045 •wildtype_control

77/101 Experiment OS25 Expression data for heat shock in rice seedlings
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: stress condition
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
stress condition
•control •heat shock

78/101 Experiment OS24 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: line
GeneChip Type: Rice57k
Experiment design (14 hybridizations)
line
•stable transgenic(Bengal) •control for stable transgenic(Bengal) •control for unstable(Nipponbare) •unstable transgenic(Nipponbare) •mutant stable(EstrelaA) •control mutant stable(EstrelaA) •unstable mutant(Nipponbare)

79/101 Experiment OS23 Transcriptome analysis of gibberellin-signaling mutants in rice
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genetic line
GeneChip Type: Rice57k
Experiment design (12 hybridizations)
genetic line
•Taichung 65 •gid1-3 •gid2-1 •slr1(k1001)

80/101 Experiment OS22 antiOsLIC collar chip
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: antisense transgenic
GeneChip Type: Rice57k
Experiment design (2 hybridizations)
antisense transgenic
•wildtype_control •antiOcLIC

81/101 Experiment OS21 Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: phenotype
GeneChip Type: Rice57k
Experiment design (2 hybridizations)
phenotype
•yellow leaf tip •green leaf tip

82/101 Experiment OS20 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, root response
GeneChip Type: Rice57k
Experiment design (12 hybridizations)
genotype
•Azucena •Bala
root response
•at wax level •buckled at wax level •before wax level

83/101 Experiment OS19 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: cultivar, infection, time
GeneChip Type: Rice57k
Experiment design (24 hybridizations)
cultivar
•IAC165(susceptible) •Nipponbare(resistant)
time
•2 dpi •4 dpi •11 dpi
infection
•mock •parasite

84/101 Experiment OS18 Expression information of splicing factor OsSKIPa knock-down and overexpressed rice
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
genotype
•S58S(overexpressor) •S59R(repressed) •wildtype(control)

85/101 Experiment OS17 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
genotype
•Zhonghua11(wildtype) •gif1(mutant)

86/101 Experiment OS16 Genome-wide gene expression profiling of rice stigma
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: organism part name
GeneChip Type: Rice57k
Experiment design (13 hybridizations)
organism part name
•stigma •ovary •suspension cultured cells •seedling shoot •seedling root •mature anther •embryo 10day •endosperm 10day •seed 5DAP

87/101 Experiment OS15 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: RNAi_transgenic
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
RNAi_transgenic
•WT_control •RNAi_transgenic

88/101 Experiment OS14 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: stress condition
GeneChip Type: Rice57k
Experiment design (4 hybridizations)
stress condition
•aerobic_control •anoxic

89/101 Experiment OS13 Gene expression in OsRR6-overexpression line
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genetic line
GeneChip Type: Rice57k
Experiment design (4 hybridizations)
genetic line
•control •OsRR6-overexpressor

90/101 Experiment OS12 Cytokinin responsive genes in rice
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: compound, organism part name, time
GeneChip Type: Rice57k
Experiment design (24 hybridizations)
organism part name
•root •leaf
compound
•DMSO •tZeatin
time
•30 mins •120 mins

91/101 Experiment OS11 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: compound, cultivar
GeneChip Type: Rice57k
Experiment design (12 hybridizations)
cultivar
•Bala •Azucena
compound
•0ppm Arsenate (Control) •1ppm Arsenate

92/101 Experiment OS10 Expression data for stress treatment in rice seedlings
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: stress condition
GeneChip Type: Rice57k
Experiment design (12 hybridizations)
stress condition
•Control •Drought •Salt •Cold

93/101 Experiment OS9 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: disease type, genotype
GeneChip Type: Rice57k
Experiment design (12 hybridizations)
genotype
•WuYun3 •KT95-418
disease type
•RSV-infected •non-infected

94/101 Experiment OS8 Expression data from rice embryo,endosperm,root,leaf and seedling
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: organism part name
GeneChip Type: Rice57k
Experiment design (10 hybridizations)
organism part name
•emb6D •endo6D •leaf •root •seedling

95/101 Experiment OS7 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: Pathogen Inoculation, time
GeneChip Type: Rice57k
Experiment design (8 hybridizations)
Pathogen Inoculation
•mock •FR13
time
•3 dpi •4 dpi

96/101 Experiment OS6 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
Submitter: PLEXdb Curator
Head of Lab: xx
Experiment Factors: genotype
GeneChip Type: Rice57k
Experiment design (9 hybridizations)
genotype
•OsWRKY13_Overexp_D11UM1-1 •OsWRKY13_Overexp_D11UM7-2 •wildtype_control

97/101 Experiment OS5 Expression data for reproductive development in rice
Submitter: PLEXdb Curator
Experiment Factors: developmental stage name
GeneChip Type: Rice57k
Experiment design (45 hybridizations)
developmental stage name
•Root, 7-day-old Seedling •Mature leaf •Y Leaf •SAM •Young inflorescence (P1, upto 3 cm) •Inflorescence (P2, 3 - 5 cm) •Inflorescence (P3, 5 - 10 cm) •Inflorescence (P4, 10 - 15 cm) •Inflorescence (P5, 15 - 22 cm) •Inflorescence (P6, 22 - 30 cm) •Seed (S1, 0 - 2 dap) •Seed (S2, 3 - 4 dap) •Seed (S3, 5 - 10 dap) •Seed (S4, 11 - 20 dap) •Seed (S5, 21 - 29 dap)

98/101 Experiment OS4 Resistance gene-dependent responses in rice to the bacterial blight pathogen Xanthomonas oryzae pv. oryzae
Submitter: David O Nino-Liu
Head of Lab: Adam J Bogdanove
Experiment Factors: genotype, time
GeneChip Type: Rice57k
Experiment design (45 hybridizations)
genotype
•IR24 •IRBB5 •IRBB7
time
•0 hai •3 hai •6 hai •12 hai •24 hai

99/101 Experiment OS3 Comparative transcriptional profiling of rice undergoing infection by Xanthomonas oryzae pv. oryzae or by X. oryzae pv. oryzicola
Submitter: David O Nino-Liu
Head of Lab: Adam Bogdanove
Experiment Factors: pathogen isolates, time
GeneChip Type: Rice57k
Experiment design (60 hybridizations)
pathogen isolates
•XOC •XOO •MOCK
time
•2 hai •4 hai •8 hai •24 hai •96 hai

100/101 Experiment OS2 Comparative Transcriptional Profiling of Two Contrasting Rice Genotypes under Salinity Stress during the Vegetative Growth Stage
Submitter: PLEXdb Curator
Head of Lab: Timothy Close
Experiment Factors: genetic line, stress condition
GeneChip Type: Rice57k
Experiment design (11 hybridizations)
genetic line
•FL478 •IR29
stress condition
•control •salt stress

101/101 Experiment OS1 Rice 57K Affymetrix GeneChip Test
Submitter: Lishuang Shen
Head of Lab: Timothy Close
Experiment Factors: dose
GeneChip Type: Rice57k
Experiment design (6 hybridizations)
dose
•HiSpike •LowSpike

 
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