PLEXdb Experiment Search Results

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Experiment Search Results

Rice57k

1/101	Experiment OS102	Expression data from IR64 rice transformed with 35S::OsPSTOL1 gene
Submitter:		PLEXdb Curator
Head of Lab:		Sigrid Heuer
Experiment Factors:		genotype, nutrient
GeneChip Type:		Rice57k
Experiment design (8 hybridizations) genotype •transgenic •non-transgenic nutrient •P deficient •P fertilized

2/101	Experiment OS101	Comparison of transcriptome profile between wild-type and dao mutant plants
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		genotype
GeneChip Type:		Rice57k
Experiment design (6 hybridizations) genotype •wildtype •dao mutant

3/101	Experiment OS100	Expression data from OsRP1L1-overexpressing plant leaf in japonica rice (cv. Ishikari-shiroge (I-S))
Submitter:		PLEXdb Curator
Head of Lab:		Jianping Chen
Experiment Factors:		genotype
GeneChip Type:		Rice57k
Experiment design (6 hybridizations) genotype •OsRP1L1 overexpressing •Wild type

4/101	Experiment OS99	Comparative Transcriptomes Profiling of Photoperiod-sensitive Male Sterile Rice Nongken 58S between Short Day and Long Day Condition
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		developmental stage name, photoperiod
GeneChip Type:		Rice57k
Experiment design (12 hybridizations) photoperiod •LD •SD developmental stage name •pistil/stamen •glume pds

5/101	Experiment OS98	Nitrogen-efficient rice over-expressing alanine aminotransferase
Submitter:		PLEXdb Curator
Head of Lab:		Perrin Hudson Beatty
Experiment Factors:		genetic line, organism part name
GeneChip Type:		Rice57k
Experiment design (32 hybridizations) organism part name •shoot •root genetic line •wildtype-NB •AlaAT-ox-1/7 •AlaAT-ox-1/8 •AlaAT-ox-3/8

6/101	Experiment OS97	Comparison of transcriptome profile between wild-type and Epi-df mutant plants
Submitter:		PLEXdb Curator
Head of Lab:		Li Zhi-Kang
Experiment Factors:		genotype
GeneChip Type:		Rice57k
Experiment design (6 hybridizations) genotype •WT •Epi-df

7/101	Experiment OS96	Expression data of one-week-old rice seedlings exposed to Pi-deficient solution for 6, 24, 48, 72 hours
Submitter:		PLEXdb Curator
Head of Lab:		Wen-Hao Zhang
Experiment Factors:		nutrient
GeneChip Type:		Rice57k
Experiment design (10 hybridizations) nutrient •Pi sufficient control •Pi deficient 6 hrs •Pi deficient 24 hrs •Pi deficient 48 hrs •Pi deficient 72 hrs

8/101	Experiment OS95	Genome-wide gene expression profiling of rice Zhonghua11 and ila1 lamina joint
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		genotype
GeneChip Type:		Rice57k
Experiment design (4 hybridizations) genotype •WT ZH11 •mutant ila1

9/101	Experiment OS94	Gene expression in mature pollen and sperm cells versus young seedling as a vegetative sporophyte reference control
Submitter:		PLEXdb Curator
Head of Lab:		Scott D Russell
Experiment Factors:		developmental stage name
GeneChip Type:		Rice57k
Experiment design (9 hybridizations) developmental stage name •seedling V3 stage •pollen at anthesis •sperm at anthesis

10/101	Experiment OS93	Gene Expression Profiling during Male Gametophyte Development in Rice
Submitter:		PLEXdb Curator
Head of Lab:		Sheng-hua Wang
Experiment Factors:		developmental stage name
GeneChip Type:		Rice57k
Experiment design (6 hybridizations) developmental stage name •UNM •BCP •TCP

11/101	Experiment OS92	Rice gene global expression during nonhost interaction with Blumeria graminis f. sp. hordei (Bgh)
Submitter:		PLEXdb Curator
Head of Lab:		Pamela Abbruscato
Experiment Factors:		pathogen infection
GeneChip Type:		Rice57k
Experiment design (6 hybridizations) pathogen infection •Bgh •mock

12/101	Experiment OS91	Rice gene global expression analysis upon inoculation with different Magnaporthe isolates
Submitter:		PLEXdb Curator
Head of Lab:		Pamela Abbruscato
Experiment Factors:		pathogen inoculation
GeneChip Type:		Rice57k
Experiment design (15 hybridizations) pathogen inoculation •BR29 •BR32 •CL367 •FR13 •mock

13/101	Experiment OS90	Expression data from rice seeds during low temperature treatment
Submitter:		PLEXdb Curator
Head of Lab:		Hong-Wei Xue
Experiment Factors:		cultivar, treatment
GeneChip Type:		Rice57k
Experiment design (16 hybridizations) cultivar •Hanfeng •Zhonghua11 treatment •4DAF-2d cold •4DAF-2d normal •4DAF •10DAF-2d cold •10 DAF-2d normal •10DAF

14/101	Experiment OS89	Expression data from rice embryo and endosperm development
Submitter:		PLEXdb Curator
Head of Lab:		Hong-Wei Xue
Experiment Factors:		developmental stage name, tissue type name
GeneChip Type:		Rice57k
Experiment design (14 hybridizations) tissue type name •ovary •embryo •endosperm developmental stage name •0 DAF •3 DAF •9 DAF •12 DAF •16 DAF

15/101	Experiment OS88	Gene expression profiling of rice embryogenic calli after Agrobacterium infection (Part 2-probe selection)
Submitter:		PLEXdb Curator
Head of Lab:		Yongjun Lin
Experiment Factors:		genomic DNA
GeneChip Type:		Rice57k
Experiment design (6 hybridizations) genomic DNA •Nipponbare gDNA •Zhensan gDNA

16/101	Experiment OS87	Gene expression profiling of rice embryogenic calli after Agrobacterium infection (part 1-gene expression)
Submitter:		PLEXdb Curator
Head of Lab:		Yongjun Lin
Experiment Factors:		cultivar, time
GeneChip Type:		Rice57k
Experiment design (30 hybridizations) cultivar •Nipponbare •Zhenshan 97 time •0 hrs •1 hrs •6 hrs •12 hrs •24 hrs

17/101	Experiment OS86	Expression data from LRK1 060615 transgenic rice and control 9311
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		genotype
GeneChip Type:		Rice57k
Experiment design (2 hybridizations) genotype •control •LRK1 transgenic

18/101	Experiment OS85	Expression data from infected (Xanthomonas oryzae pv. Oryzae (P10)) leaf in japonica rice (cv. Y73)
Submitter:		PLEXdb Curator
Head of Lab:		Jianping Chen
Experiment Factors:		pathogen inoculation
GeneChip Type:		Rice57k
Experiment design (6 hybridizations) pathogen inoculation •Xoo •mock

19/101	Experiment OS84	Differential expression for salt and drought stress
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		strain, stress condition
GeneChip Type:		Rice57k
Experiment design (16 hybridizations) strain •drought sensitive •drought tolerant •salt sensitive •salt tolerant stress condition •drought stress •salt stress •control

20/101	Experiment OS83	Expression profile of high yielding rice introgression line
Submitter:		PLEXdb Curator
Head of Lab:		Sarla Neelamraju
Experiment Factors:		developmental stage name, genetic line
GeneChip Type:		Rice57k
Experiment design (12 hybridizations) genetic line •KMR3 •IL50-7 developmental stage name •flag leaf •panicle

21/101	Experiment OS82	Expression data from rice after brown planthopper attack
Submitter:		PLEXdb Curator
Head of Lab:		Xue-Xia Miao
Experiment Factors:		cultivar, time
GeneChip Type:		Rice57k
Experiment design (18 hybridizations) cultivar •RHT •TN1 time •0 hrs •8 hrs •24 hrs

22/101	Experiment OS81	Global gene expression profiles of Oryza sativa wild type Nipponbare and mutant coi1-13
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		genotype
GeneChip Type:		Rice57k
Experiment design (6 hybridizations) genotype •Nipponbare •coi1-13

23/101	Experiment OS80	Express data from rice endosperm
Submitter:		PLEXdb Curator
Head of Lab:		Zhaohua Peng
Experiment Factors:		developmental stage name
GeneChip Type:		Rice57k
Experiment design (6 hybridizations) developmental stage name •endosperm •leaf (control)

24/101	Experiment OS79	A single functional blast resistance gene Pi54 activates complex defense mechanism in Rice
Submitter:		PLEXdb Curator
Head of Lab:		Dr. Tilak Raj Sharma
Experiment Factors:		genotype, pathogen inoculation
GeneChip Type:		Rice57k
Experiment design (8 hybridizations) genotype •TP •TP-Pi54 pathogen inoculation •control •inoculated

25/101	Experiment OS78	Expression data from transgenic rice with anti-OsPDCD5
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		genetic line, treatment
GeneChip Type:		Rice57k
Experiment design (6 hybridizations) genetic line •nontransgenic •transgenic treatment •normal (No NaCl) •20mins NaCl •3 hrs NaCl

26/101	Experiment OS77	Expression data from rice varieties IRAT109 and ZS97 for drought stress treatment in flag leaves
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		genotype, treatment
GeneChip Type:		Rice57k
Experiment design (16 hybridizations) genotype •IRAT109 •ZS97 treatment •no stress •slight •moderate •severe

27/101	Experiment OS76	Differential expression for rice-gall midge interaction
Submitter:		PLEXdb Curator
Head of Lab:		J. S. Bentur
Experiment Factors:		insect infestation
GeneChip Type:		Rice57k
Experiment design (9 hybridizations) insect infestation •control •GMB1 •GMB4M

28/101	Experiment OS75	DNA microarray data from transgenic rice Huahui 1 (HH1) and its parent Minghui 63 (MH63)
Submitter:		PLEXdb Curator
Head of Lab:		Zhi Liu
Experiment Factors:		treatment
GeneChip Type:		Rice57k
Experiment design (60 hybridizations) treatment •HH1-30 •MH63-30 •HH1-60 •MH63-60 •HH1-75 •MH63-75 •HH1-90 •MH63-90 •HH1-HT •MH63-HT •HH1-LT •MH63-LT •HH1-Jxol •MH63-Jxol •HH1-Pxo99 •MH63-Pxo99 •HH1-Rs105 •MH63-Rs105 •HH1-Xv5 •MH63-Xv5

29/101	Experiment OS74	DNA microarray data from transgenic rice KMD and its parent XS11
Submitter:		PLEXdb Curator
Head of Lab:		Zhi Liu
Experiment Factors:		genotype
GeneChip Type:		Rice57k
Experiment design (6 hybridizations) genotype •KMD •XS11

30/101	Experiment OS73	Expression comparasion of rice seedlings of Osabl1 mutant and WT under ABA treatment
Submitter:		PLEXdb Curator
Head of Lab:		Dr. Hong-Wei Xue
Experiment Factors:		genotype
GeneChip Type:		Rice57k
Experiment design (4 hybridizations) genotype •WT •Osabl1

31/101	Experiment OS72	Expression data from PSARK::IPT and wildtype rice plants
Submitter:		PLEXdb Curator
Head of Lab:		Eduardo Blumwald
Experiment Factors:		genotype, stress condition
GeneChip Type:		Rice57k
Experiment design (12 hybridizations) genotype •WT •PSARK::IPT stress condition •well watered •water stressed

32/101	Experiment OS71	Expression data from shoot bases of rice seedling after gravistimulation
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		organism part name, time
GeneChip Type:		Rice57k
Experiment design (15 hybridizations) organism part name •control •shoot base upper •shoot base lower time •0 hrs •.50 hrs •6 hrs

33/101	Experiment OS70	affy_meloidogyne_rice2-Oryza sativa genes expressed in the early compatible interaction with root-knot nematode
Submitter:		PLEXdb Curator
Head of Lab:		Claire Lurin
Experiment Factors:		pathogen inoculation
GeneChip Type:		Rice57k
Experiment design (6 hybridizations) pathogen inoculation •control •inoculated

34/101	Experiment OS69	Oryza sativa genes expressed in the early compatible interaction with root-knot nematode (affy_meloidogyne_rice)
Submitter:		PLEXdb Curator
Head of Lab:		Claire Lurin
Experiment Factors:		time
GeneChip Type:		Rice57k
Experiment design (9 hybridizations) time •0 hpi •48 hpi •96 hpi

35/101	Experiment OS68	Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice
Submitter:		PLEXdb Curator
Head of Lab:		Pascal Gantet
Experiment Factors:		genotype
GeneChip Type:		Rice57k
Experiment design (6 hybridizations) genotype •WT •crl1 mutant

36/101	Experiment OS67	Expression data from transgenic rice with OsEATB
Submitter:		PLEXdb Curator
Head of Lab:		Jinshui Yang
Experiment Factors:		genotype
GeneChip Type:		Rice57k
Experiment design (2 hybridizations) genotype •nontransgenic •transgenic

37/101	Experiment OS66	Comparison of transcriptional responses of two susceptible rice cultivars to strains of Xanthomonas oryzae
Submitter:		Frank White
Head of Lab:		Frank White
Experiment Factors:		cultivar, strain
GeneChip Type:		Rice57k
Experiment design (65 hybridizations) cultivar •Nipponbare •IR24 strain •PXO99A •PXO99AME7 •PXO99AME5 •MOCK •NO TREATMENT •T7174 •PXO86 •BLS303 •PXO99AME1 •PXO99AME2 •PXO99A-2

38/101	Experiment OS65	Whole-Genome Analysis of SSB Larvae Infestation Regulated Rice Genes
Submitter:		PLEXdb Curator
Head of Lab:		Guoxin Zhou
Experiment Factors:		insect infestation
GeneChip Type:		Rice57k
Experiment design (3 hybridizations) insect infestation •control •SSB infested

39/101	Experiment OS64	Transcriptome Phase Distribution Analysis Reveals Diurnal Regulated Biological Processes and Key Pathways in Rice Flag Leaves and Seedling Leaves
Submitter:		PLEXdb Curator
Head of Lab:		Yongbiao Xue
Experiment Factors:		developmental stage name, time
GeneChip Type:		Rice57k
Experiment design (40 hybridizations) developmental stage name •Seedling leaf •Flag Leaf time •Time 1 •Time 2 •Time 3 •Time 4 •Time 5 •Time 6 •Time 7 •Time 8 •Time 9 •Time 10

40/101	Experiment OS63	genome-wide gene expression profiling of rice pollen in defferent developmetn stages
Submitter:		PLEXdb Curator
Head of Lab:		Tai Wang
Experiment Factors:		developmental stage name
GeneChip Type:		Rice57k
Experiment design (24 hybridizations) developmental stage name •callus cell •leaf •root •uninucleate microspores •bicellular pollen •tricellular pollen •mature pollen •germinated pollen

41/101	Experiment OS62	Analysis of anther transcriptomes to identify genes contributing to meiosis and male gametophyte development in rice
Submitter:		PLEXdb Curator
Head of Lab:		Sanjay Kapoor
Experiment Factors:		developmental stage name
GeneChip Type:		Rice57k
Experiment design (12 hybridizations) developmental stage name •pre-meiotic anther •meiotic anther •anther(single celled pollen) •anther(trinucleate pollen)

42/101	Experiment OS61	Expression analysis of genes in the lamina joint of lc1 mutant compared with that of wild-type
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		genotype
GeneChip Type:		Rice57k
Experiment design (4 hybridizations) genotype •wild type •lc1 mutant

43/101	Experiment OS60	A global analysis of QTLs for expression variations in rice shoot at early seedling stage
Submitter:		PLEXdb Curator
Head of Lab:		Qifa Zhang
Experiment Factors:		genetic line
GeneChip Type:		Rice57k
Experiment design (226 hybridizations) genetic line •001 •004 •005 •006 •007 •009 •012 •013 •014 •015 •016 •017 •018 •019 •020 •022 •023 •026 •027 •030 •039 •042 •047 •048 •053 •054 •059 •062 •066 •068 •071 •072 •077 •080 •081 •082 •083 •084 •086 •087 •089 •090 •095 •099 •101 •103 •105 •106 •109 •111 •112 •114 •118 •123 •125 •129 •131 •133 •134 •137 •139 •140 •141 •145 •147 •149 •150 •151 •152 •154 •155 •156 •159 •160 •161 •162 •163 •164 •165 •167 •169 •173 •175 •178 •180 •183 •184 •185 •186 •187 •191 •192 •193 •195 •197 •198 •199 •203 •204 •205 •206 •209 •210 •215 •216 •219 •232 •236 •238 •241 •Zhenshan 97 •Minghui 63

44/101	Experiment OS58	Expression data from rice seedlings of wild type and the CHR729 mutant
Submitter:		PLEXdb Curator
Head of Lab:		Dao-Xiu Zhou
Experiment Factors:		genotype
GeneChip Type:		Rice57k
Experiment design (6 hybridizations) genotype •CHR729 T-DNA mutant •wild type

45/101	Experiment OS57	Identification of Rhizome-Specific Genes by Genome-wide Differential Expression Analysis in Oryza longistaminata
Submitter:		PLEXdb Curator
Head of Lab:		Binying Fu and Zhikang L
Experiment Factors:		tissue type name
GeneChip Type:		Rice57k
Experiment design (15 hybridizations) tissue type name •shoot tip •rhizome tip •rhizome internodes •shoot internodes •young leaf

46/101	Experiment OS56	Expression data from field droughted rice plants
Submitter:		PLEXdb Curator
Head of Lab:		Adam H Price
Experiment Factors:		cultivar, stress condition
GeneChip Type:		Rice57k
Experiment design (12 hybridizations) stress condition •control •drought cultivar •Azucena •Bala

47/101	Experiment OS55	Rice leaf transcriptome from 6 week old plants
Submitter:		PLEXdb Curator
Head of Lab:		Pamela C. Ronald
Experiment Factors:		cultivar
GeneChip Type:		Rice57k
Experiment design (3 hybridizations) cultivar •Kitaake

48/101	Experiment OS54	Genome-wide gene expression of rice cultivar Gui-630 (Indica) X Taiwanjing (Japonica) and mutant lemmata (lem) panicle
Submitter:		PLEXdb Curator
Head of Lab:		Yongbiao Xue
Experiment Factors:		genotype
GeneChip Type:		Rice57k
Experiment design (6 hybridizations) genotype •lemmata mutant •wildtype

49/101	Experiment OS53	Transgenic rice line carrying the maize resistance gene Rxo1 to Xanthomonas oryzae pv. oryzicola
Submitter:		PLEXdb Curator
Head of Lab:		Zhi-Kang Li
Experiment Factors:		genotype, pathogen inoculation
GeneChip Type:		Rice57k
Experiment design (12 hybridizations) genotype •transgenic(9804-Rxo1) •9804 pathogen inoculation •Xoc inoculated •control

50/101	Experiment OS52	Microarray data from aerial tissue of submergence tolerant M202(Sub1) and intolerant M202
Submitter:		PLEXdb Curator
Head of Lab:		Julia Bailey-Serres
Experiment Factors:		genotype, stress condition
GeneChip Type:		Rice57k
Experiment design (8 hybridizations) genotype •M202 •M202(Sub1) stress condition •control •submerged

51/101	Experiment OS51	bulked RILs with high and low grain number per panicle derived from 2 cultivars at panicle primordia stage
Submitter:		PLEXdb Curator
Head of Lab:		Nagendra K. Singh
Experiment Factors:		genetic line
GeneChip Type:		Rice57k
Experiment design (4 hybridizations) genetic line •bulkRIL(high grain no) •bulkRIL(low grain no)

52/101	Experiment OS50	Transcription profiling of parental lines and bulked salt sensitive and salt tolerant RILs derived from 2 rice varieties
Submitter:		PLEXdb Curator
Head of Lab:		Nagendra K. Singh
Experiment Factors:		genetic line, stress condition
GeneChip Type:		Rice57k
Experiment design (16 hybridizations) genetic line •MI48 •CSR27 •Bulk tolerant •Bulk sensitive stress condition •control •salt stressed

53/101	Experiment OS49	Whole genome transcriptome profiling of Pusa 1266 and Pusa Basmati 1 in panicle primordia stage
Submitter:		PLEXdb Curator
Head of Lab:		Nagendra Singh
Experiment Factors:		cultivar
GeneChip Type:		Rice57k
Experiment design (4 hybridizations) cultivar •Pusa1266 •Pusa Basmati

54/101	Experiment OS48	Temporal regulatory role of miR156 during leaf ontogenesis
Submitter:		PLEXdb Curator
Head of Lab:		Lizhong Xiong
Experiment Factors:		genotype, tissue type name
GeneChip Type:		Rice57k
Experiment design (12 hybridizations) tissue type name •younger leaves(L1) •older leaves(L4-5) genotype •miR156 •wildtype

55/101	Experiment OS47	Gene expression in leaf blades of the rice Os-LBD37 overexpressor line RK16331-13
Submitter:		PLEXdb Curator
Head of Lab:		Kazuki Saito
Experiment Factors:		genetic line
GeneChip Type:		Rice57k
Experiment design (6 hybridizations) genetic line •empty vector control •Os-LBD37 overexpressor

56/101	Experiment OS46	Rice expression atlas: Plant reproductive process
Submitter:		PLEXdb Curator
Head of Lab:		Nori Kurata
Experiment Factors:		tissue type name
GeneChip Type:		Rice57k
Experiment design (98 hybridizations) tissue type name •Anther at An1 •Anther at Mei1 •Anther at M1 •Anther at M2 •Anther at M3 •Anther at P1 •Anther at P2 •Anther at P3 •Stigma control •Ovary control •Pollinating stigma •Pollinating ovary •Pollen tube growth •Fertilization •Zygote formation •Embryosac control_bottom •embryosac_bottom 1 DAP •embryosac_bottom 2 DAP •embryosac_bottom 3 DAP •embryosac_bottom 4 DAP •Embryosac control_top •embryosac_top 1 DAP •embryosac_top 2 DAP •embryosac_top 3 DAP •embryosac_top 4 DAP •Growing callus •Regenerating callus 2 days •Regenerating callus 4 days •Regenerating callus 6 days •Regenerating callus 8 days •Root •Shoot •Young leaf

57/101	Experiment OS45	Rice expression atlas (4): Vegetative tissues
Submitter:		PLEXdb Curator
Head of Lab:		Nori Kurata
Experiment Factors:		tissue type name
GeneChip Type:		Rice57k
Experiment design (25 hybridizations) tissue type name •growing callus •regenerating callus 2d •regenerating callus 4d •regenerating callus 6d •regenerating callus 8d •root •shoot •young leaf

58/101	Experiment OS44	Rice expression atlas (3): Early embryogenesis
Submitter:		PLEXdb Curator
Head of Lab:		Nori Kurata
Experiment Factors:		organism part name, time
GeneChip Type:		Rice57k
Experiment design (27 hybridizations) organism part name •embryo sac bottom •embryo sac top time •control •1 DAP •2 DAP •3 DAP •4 DAP

59/101	Experiment OS43	Rice expression atlas (2): Pollination - Fertilization
Submitter:		PLEXdb Curator
Head of Lab:		Nori Kurata
Experiment Factors:		tissue type name
GeneChip Type:		Rice57k
Experiment design (20 hybridizations) tissue type name •Stigma control •Ovary control •Pollinating stigma •Pollinating ovary •Pollen tube growth •Fertilization •Zygote formation

60/101	Experiment OS42	Rice expression atlas (1): Anther development
Submitter:		PLEXdb Curator
Head of Lab:		Nori Kurata
Experiment Factors:		developmental stage name
GeneChip Type:		Rice57k
Experiment design (26 hybridizations) developmental stage name •Anther An1 •Anther Mei1 •Anther M1 •Anther M2 •Anther M3 •Anther P1 •Anther P2 •Anther P3

61/101	Experiment OS41	Expression data from rice genotypes FL478 and IR29
Submitter:		PLEXdb Curator
Head of Lab:		Harkamal Walia
Experiment Factors:		genotype, stress condition
GeneChip Type:		Rice57k
Experiment design (11 hybridizations) genotype •FL478 •IR29 stress condition •control •salt

62/101	Experiment OS40	Transcriptional profiling of Cellulase induced hypersensitive reaction like response in rice
Submitter:		PLEXdb Curator
Head of Lab:		Ramesh V. Sonti
Experiment Factors:		compound
GeneChip Type:		Rice57k
Experiment design (6 hybridizations) compound •potassium phosphate buffer •Xoo cellulase

63/101	Experiment OS39	Comparsion of gene expression profile in polaris (pola) mutant lines and its POLARIS (POLA) wild-type at meiotic and ripening stages
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		developmental stage name, genotype
GeneChip Type:		Rice57k
Experiment design (4 hybridizations) genotype •wild type •pola mutant •pola RNAi developmental stage name •meiotic stage •ripening stage

64/101	Experiment OS38	affy_xoo_rice-Transcriptomics-based identification of Xoo strain BAI3 Talc targets in rice
Submitter:		PLEXdb Curator
Head of Lab:		J. Sáez-Vásquez
Experiment Factors:		pathogen inoculation
GeneChip Type:		Rice57k
Experiment design (9 hybridizations) pathogen inoculation •Xoo(BAI3 delta talc) •mock •Xoo(BAI3)

65/101	Experiment OS37	Genome-wide temporal-spatial gene expression profiling of drought responsiveness in rice
Submitter:		PLEXdb Curator
Head of Lab:		Bin-Ying Fu and Zhi-Kang Li
Experiment Factors:		developmental stage name, stress condition, tissue type name
GeneChip Type:		Rice57k
Experiment design (36 hybridizations) stress condition •control •drought tissue type name •leaves •roots •panicle developmental stage name •tillering stage •panicle elongation stage •booting stage

66/101	Experiment OS36	Methanol is an endogenous elicitor molecule upon senescence of detached rice leaves
Submitter:		PLEXdb Curator
Head of Lab:		Kyoungwhan Back
Experiment Factors:		compound
GeneChip Type:		Rice57k
Experiment design (3 hybridizations) compound •water •MeOH

67/101	Experiment OS35	Temporal gene expression analyisis from rice root (cv. Nipponbare) infected with Magnaporthe oryzae strain Guy11
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		pathogen inoculation, time
GeneChip Type:		Rice57k
Experiment design (12 hybridizations) pathogen inoculation •Mock •Guy11_inoculated time •2 dpi •4 dpi •6 dpi

68/101	Experiment OS34	Comparison of transcriptome profile between wild-type and dst mutant plants
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		genotype
GeneChip Type:		Rice57k
Experiment design (6 hybridizations) genotype •Wild_Type •dst

69/101	Experiment OS33	Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		genotype
GeneChip Type:		Rice57k
Experiment design (4 hybridizations) genotype •Wild Type •pheonix

70/101	Experiment OS32	Dissecting the developmental transcriptomes of rice
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		cultivar, organism part name
GeneChip Type:		Rice57k
Experiment design (190 hybridizations) cultivar •Minghui63 •Zhenshan97 organism part name •callus1 •callus2 •callus3 •callus4 •callus5 •callus6 •callus7 •callus8 •germinating_seed •plumule1 •radicle1 •plumule2 •radicle2 •seedling3 •seedling4 •seedling5 •shoot •root •leaf1 •sheath1 •leaf2 •sheath2 •panicle4 •stem1 •leaf3 •stem2 •panicle5 •palea/lemma •stamen •spikelet •endosperm1 •endosperm2 •endosperm3 •leaf4 •seedling1 •seedling2 •panicle1 •panicle2 •panicle3

71/101	Experiment OS31	Transcriptome analysis of iron and phosphorus interaction in rice seedlings
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		compound1, compound2, organism part name
GeneChip Type:		Rice57k
Experiment design (16 hybridizations) organism part name •Root •Shoot compound1 •full_P •no_P compound2 •full_Fe •no_Fe

72/101	Experiment OS30	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		genotype, stress condition
GeneChip Type:		Rice57k
Experiment design (23 hybridizations) genotype •FL478 •IR29 •IR63731 •Pokkali stress condition •Control •Salt

73/101	Experiment OS29	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		cultivar
GeneChip Type:		Rice57k
Experiment design (10 hybridizations) cultivar •Nipponbare •93-11

74/101	Experiment OS28	Rice seedling hormone treatment
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		treatment
GeneChip Type:		Rice57k
Experiment design (6 hybridizations) treatment •control •IAA treated •BAP treated

75/101	Experiment OS27	Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		genetic line
GeneChip Type:		Rice57k
Experiment design (9 hybridizations) genetic line •Transgenic line 4 •Transgenic line 22 •Wild-type

76/101	Experiment OS26	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		genotype
GeneChip Type:		Rice57k
Experiment design (17 hybridizations) genotype •mutant_d1 •mutant_d256 •mutant_d1137 •mutant_d2943 •mutant_g282 •mutant_g650 •mutant_g6485 •mutant_g6489 •mutant_g6603 •mutant_g6686 •mutant_g6728 •mutant_g7534 •mutant_g9799 •mutant_g6989 •mutant_f1856 •mutant_f2045 •wildtype_control

77/101	Experiment OS25	Expression data for heat shock in rice seedlings
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		stress condition
GeneChip Type:		Rice57k
Experiment design (6 hybridizations) stress condition •control •heat shock

78/101	Experiment OS24	Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		line
GeneChip Type:		Rice57k
Experiment design (14 hybridizations) line •stable transgenic(Bengal) •control for stable transgenic(Bengal) •control for unstable(Nipponbare) •unstable transgenic(Nipponbare) •mutant stable(EstrelaA) •control mutant stable(EstrelaA) •unstable mutant(Nipponbare)

79/101	Experiment OS23	Transcriptome analysis of gibberellin-signaling mutants in rice
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		genetic line
GeneChip Type:		Rice57k
Experiment design (12 hybridizations) genetic line •Taichung 65 •gid1-3 •gid2-1 •slr1(k1001)

80/101	Experiment OS22	antiOsLIC collar chip
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		antisense transgenic
GeneChip Type:		Rice57k
Experiment design (2 hybridizations) antisense transgenic •wildtype_control •antiOcLIC

81/101	Experiment OS21	Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		phenotype
GeneChip Type:		Rice57k
Experiment design (2 hybridizations) phenotype •yellow leaf tip •green leaf tip

82/101	Experiment OS20	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		genotype, root response
GeneChip Type:		Rice57k
Experiment design (12 hybridizations) genotype •Azucena •Bala root response •at wax level •buckled at wax level •before wax level

83/101	Experiment OS19	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		cultivar, infection, time
GeneChip Type:		Rice57k
Experiment design (24 hybridizations) cultivar •IAC165(susceptible) •Nipponbare(resistant) time •2 dpi •4 dpi •11 dpi infection •mock •parasite

84/101	Experiment OS18	Expression information of splicing factor OsSKIPa knock-down and overexpressed rice
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		genotype
GeneChip Type:		Rice57k
Experiment design (6 hybridizations) genotype •S58S(overexpressor) •S59R(repressed) •wildtype(control)

85/101	Experiment OS17	Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		genotype
GeneChip Type:		Rice57k
Experiment design (6 hybridizations) genotype •Zhonghua11(wildtype) •gif1(mutant)

86/101	Experiment OS16	Genome-wide gene expression profiling of rice stigma
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		organism part name
GeneChip Type:		Rice57k
Experiment design (13 hybridizations) organism part name •stigma •ovary •suspension cultured cells •seedling shoot •seedling root •mature anther •embryo 10day •endosperm 10day •seed 5DAP

87/101	Experiment OS15	Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		RNAi_transgenic
GeneChip Type:		Rice57k
Experiment design (6 hybridizations) RNAi_transgenic •WT_control •RNAi_transgenic

88/101	Experiment OS14	Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		stress condition
GeneChip Type:		Rice57k
Experiment design (4 hybridizations) stress condition •aerobic_control •anoxic

89/101	Experiment OS13	Gene expression in OsRR6-overexpression line
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		genetic line
GeneChip Type:		Rice57k
Experiment design (4 hybridizations) genetic line •control •OsRR6-overexpressor

90/101	Experiment OS12	Cytokinin responsive genes in rice
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		compound, organism part name, time
GeneChip Type:		Rice57k
Experiment design (24 hybridizations) organism part name •root •leaf compound •DMSO •tZeatin time •30 mins •120 mins

91/101	Experiment OS11	Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		compound, cultivar
GeneChip Type:		Rice57k
Experiment design (12 hybridizations) cultivar •Bala •Azucena compound •0ppm Arsenate (Control) •1ppm Arsenate

92/101	Experiment OS10	Expression data for stress treatment in rice seedlings
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		stress condition
GeneChip Type:		Rice57k
Experiment design (12 hybridizations) stress condition •Control •Drought •Salt •Cold

93/101	Experiment OS9	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		disease type, genotype
GeneChip Type:		Rice57k
Experiment design (12 hybridizations) genotype •WuYun3 •KT95-418 disease type •RSV-infected •non-infected

94/101	Experiment OS8	Expression data from rice embryo,endosperm,root,leaf and seedling
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		organism part name
GeneChip Type:		Rice57k
Experiment design (10 hybridizations) organism part name •emb6D •endo6D •leaf •root •seedling

95/101	Experiment OS7	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
Submitter:		PLEXdb Curator
Head of Lab:		--
Experiment Factors:		Pathogen Inoculation, time
GeneChip Type:		Rice57k
Experiment design (8 hybridizations) Pathogen Inoculation •mock •FR13 time •3 dpi •4 dpi

96/101	Experiment OS6	Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
Submitter:		PLEXdb Curator
Head of Lab:		xx
Experiment Factors:		genotype
GeneChip Type:		Rice57k
Experiment design (9 hybridizations) genotype •OsWRKY13_Overexp_D11UM1-1 •OsWRKY13_Overexp_D11UM7-2 •wildtype_control

97/101	Experiment OS5	Expression data for reproductive development in rice
Submitter:		PLEXdb Curator
Experiment Factors:		developmental stage name
GeneChip Type:		Rice57k
Experiment design (45 hybridizations) developmental stage name •Root, 7-day-old Seedling •Mature leaf •Y Leaf •SAM •Young inflorescence (P1, upto 3 cm) •Inflorescence (P2, 3 - 5 cm) •Inflorescence (P3, 5 - 10 cm) •Inflorescence (P4, 10 - 15 cm) •Inflorescence (P5, 15 - 22 cm) •Inflorescence (P6, 22 - 30 cm) •Seed (S1, 0 - 2 dap) •Seed (S2, 3 - 4 dap) •Seed (S3, 5 - 10 dap) •Seed (S4, 11 - 20 dap) •Seed (S5, 21 - 29 dap)

98/101	Experiment OS4	Resistance gene-dependent responses in rice to the bacterial blight pathogen Xanthomonas oryzae pv. oryzae
Submitter:		David O Nino-Liu
Head of Lab:		Adam J Bogdanove
Experiment Factors:		genotype, time
GeneChip Type:		Rice57k
Experiment design (45 hybridizations) genotype •IR24 •IRBB5 •IRBB7 time •0 hai •3 hai •6 hai •12 hai •24 hai

99/101	Experiment OS3	Comparative transcriptional profiling of rice undergoing infection by Xanthomonas oryzae pv. oryzae or by X. oryzae pv. oryzicola
Submitter:		David O Nino-Liu
Head of Lab:		Adam Bogdanove
Experiment Factors:		pathogen isolates, time
GeneChip Type:		Rice57k
Experiment design (60 hybridizations) pathogen isolates •XOC •XOO •MOCK time •2 hai •4 hai •8 hai •24 hai •96 hai

100/101	Experiment OS2	Comparative Transcriptional Profiling of Two Contrasting Rice Genotypes under Salinity Stress during the Vegetative Growth Stage
Submitter:		PLEXdb Curator
Head of Lab:		Timothy Close
Experiment Factors:		genetic line, stress condition
GeneChip Type:		Rice57k
Experiment design (11 hybridizations) genetic line •FL478 •IR29 stress condition •control •salt stress

101/101	Experiment OS1	Rice 57K Affymetrix GeneChip Test
Submitter:		Lishuang Shen
Head of Lab:		Timothy Close
Experiment Factors:		dose
GeneChip Type:		Rice57k
Experiment design (6 hybridizations) dose •HiSpike •LowSpike


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