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Experiment Search Results


Soybean
1/42 Experiment GM53 Transcriptome during autoregulation of mycorrhization in soybean
Submitter: Sara Schaarschmidt
Head of Lab: Dr. Florian Wagner
Experiment Factors: genotype, inoculation, tissue type name
GeneChip Type: Soybean
Experiment design (30 hybridizations)
genotype
•Bragg wt •nts1007
inoculation
•minus •plus
tissue type name
•root-parts AB •root-part A (myc) •root-part B (non-myc) •shoot

2/42 Experiment GM52 Expression data from salinity treated and control soybean
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: stress condition
GeneChip Type: Soybean
Experiment design (2 hybridizations)
stress condition
•salinity •control

3/42 Experiment GM51 Response of Rpp4-silenced plants to soybean rust
Submitter: Steve Whitham
Head of Lab: Michelle Graham
Experiment Factors: treatment
GeneChip Type: Soybean
Experiment design (5 hybridizations)
treatment
•BPMV-LRR •BPMV empty vector

4/42 Experiment GM50 The effects of bud removal on soybean leaf gene expression.
Submitter: PLEXdb Curator
Head of Lab: Markus Lange
Experiment Factors: time
GeneChip Type: Soybean
Experiment design (22 hybridizations)
time
•control 0 days •control 15 days •detip 15 days •control 20 days •detip-retip 20 days •control 30 days •detip-retip 30 days

5/42 Experiment GM49 Comparison of RNA expression in paravienal mesophyll (PVM) and palisade parenchyma (PP) cells.
Submitter: PLEXdb Curator
Head of Lab: Markus Lange
Experiment Factors: tissue type name
GeneChip Type: Soybean
Experiment design (6 hybridizations)
tissue type name
•PVM cells •PP cells

6/42 Experiment GM47 Transcriptional response to soybean aphid infestation in susceptible and resistant soybean plants
Submitter: Matthew E Studham
Head of Lab: Gustavo MacIntosh
Experiment Factors: cultivar, insect infestation, time
GeneChip Type: Soybean
Experiment design (24 hybridizations)
insect infestation
•Soybean aphids •No soybean aphids
cultivar
•Susceptible SD01-76R •Resistant LD05-16060
time
•1 days •7 days

7/42 Experiment GM46 Transcript profiling of soybean msh1 RNAi transgenic lines
Submitter: PLEXdb Curator
Head of Lab: Sally Mackenzie
Experiment Factors: genotype
GeneChip Type: Soybean
Experiment design (10 hybridizations)
genotype
•wild type •msh1 RNAi variegation •msh1 RNAi stunted

8/42 Experiment GM43 Expression data from the seed coats of black (iRT) and brown (irT) soybean variant for alleles of the R locus
Submitter: PLEXdb Curator
Head of Lab: Nikola Kovinich
Experiment Factors: genotype
GeneChip Type: Soybean
Experiment design (6 hybridizations)
genotype
•Black Seed Coat(iRT) •Brown Seed Coat(irT)

9/42 Experiment GM41 Expression data of Soybean root apical meristem and leaf
Submitter: PLEXdb Curator
Head of Lab: Prem Bhalla
Experiment Factors: tissue type name
GeneChip Type: Soybean
Experiment design (5 hybridizations)
tissue type name
•root apical meristem •leaf non-meristematic

10/42 Experiment GM40 Characterization of gene expression profile in developing soybean seeds by DNA microarray
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: developmental stage name
GeneChip Type: Soybean
Experiment design (8 hybridizations)
developmental stage name
•bean 2mm •bean 5mm •pod elongation •fully grown

11/42 Experiment GM39 Comparative physiology and transcriptional networks underlying the heat shock response in Populus trichocarpa, Arabidopsis thaliana and Glycine max [Soy]
Submitter: PLEXdb Curator
Head of Lab: David J Weston
Experiment Factors: temperature
GeneChip Type: Soybean
Experiment design (16 hybridizations)
temperature
•baseline •optimum •20% inhibition •30% inhibition

12/42 Experiment GM38 Soybean root hair cell response to Bradyrhizobium japonicum inoculation
Submitter: PLEXdb Curator
Head of Lab: Gary Stacey
Experiment Factors: pathogen inoculation, time
GeneChip Type: Soybean
Experiment design (42 hybridizations)
pathogen inoculation
•B. japonicum •Mock
time
•6 hai •12 hai •18 hai •24 hai •36 hai •48 hai

13/42 Experiment GM37 Molecular characterization of the Rpp4 resistance response
Submitter: Steve Whitham
Head of Lab: Steve Whitham
Experiment Factors: genotype, pathogen inoculation, time
GeneChip Type: Soybean
Experiment design (72 hybridizations)
genotype
•Williams •PI459025B
pathogen inoculation
•Mock •Hawaii 94-1
time
•12 hai •24 hai •72 hai •144 hai •216 hai •288 hai

14/42 Experiment GM36 Molecular characterization of the incompatible and compatible interaction of soybean rust disease in Rpp3-containing PI462312 line
Submitter: Steve Whitham
Head of Lab: Whitham / Baum
Experiment Factors: pathogen isolates, time
GeneChip Type: Soybean
Experiment design (54 hybridizations)
pathogen isolates
•Mock •Taiwan 80-2 (vir) •Hawaii 94-1 (avir)
time
•12 hai •24 hai •72 hai •144 hai •216 hai •288 hai

15/42 Experiment GM35 Expression data of Soybean (Glycine max) roots from different iron treatments.
Submitter: PLEXdb Curator
Head of Lab: Robert M. Stupar
Experiment Factors: genetic line, stress condition
GeneChip Type: Soybean
Experiment design (24 hybridizations)
genetic line
•IsoClark •Clark
stress condition
•Fe limited •Fe sufficient •Fe recovery •Fe sustained

16/42 Experiment GM34 Expression of the Stress-Related Genes for Glutathione S-Transferase and Ascorbate Peroxidase in the Most-Glycinin-Deficient Soybean Cultivar Tousan205 during Seed Maturation.
Submitter: PLEXdb Curator
Head of Lab: Tomoyo Narikawa
Experiment Factors: cultivar, developmental stage name
GeneChip Type: Soybean
Experiment design (8 hybridizations)
cultivar
•Nanahomare •Tamahomare
developmental stage name
•Bean5mm •Full Grown

17/42 Experiment GM33 Alterations in soybean gene expression profile after foliar application of lipo-chitooligosaccharide (LCO) from Bradyrhizobium japonicum under sub-optimal temperature
Submitter: PLEXdb Curator
Head of Lab: Donald L. Smith
Experiment Factors: compound, time
GeneChip Type: Soybean
Experiment design (12 hybridizations)
compound
•control •LCO
time
•0 hrs •48 hrs

18/42 Experiment GM32 Alkaline-stress response in Glycine soja leaf identifies specific transcription factors and ABA-mediated signaling factors
Submitter: PLEXdb Curator
Head of Lab: Yanming Zhu
Experiment Factors: time
GeneChip Type: Soybean
Experiment design (14 hybridizations)
time
•0(control) hrs •0.5 hrs •1 hrs •3 hrs •6 hrs •12 hrs •24 hrs

19/42 Experiment GM31 Circadian clock controlled gene expression in soybean seeds
Submitter: PLEXdb Curator
Head of Lab: Karen A Hudson
Experiment Factors: time
GeneChip Type: Soybean
Experiment design (26 hybridizations)
time
•24 hrs •28 hrs •32 hrs •36 hrs •40 hrs •44 hrs •48 hrs •52 hrs •56 hrs •60 hrs •64 hrs •68 hrs •72 hrs

20/42 Experiment GM30 Transcript profiling of common bean using the Soybean Genome Array: optimizing analysis by masking biased probes
Submitter: PLEXdb Curator
Head of Lab: Sam Yang
Experiment Factors: organism part name, species
GeneChip Type: Soybean
Experiment design (18 hybridizations)
species
•soybean •common bean
organism part name
•leaf •nodule •root

21/42 Experiment GM29 Gene expression profiling in soybean under aluminum stress: mechanisms of magnesium amelioration of aluminum toxicity
Submitter: PLEXdb Curator
Head of Lab: Khairy M. Soliman
Experiment Factors: compound, genotype, time
GeneChip Type: Soybean
Experiment design (24 hybridizations)
genotype
•PI416937 •Young
compound
•Aluminum •Aluminum+Magnesium
time
•12 hrs •72 hrs

22/42 Experiment GM28 Global transcriptome profiling of wild soybean (Glycine soja) roots under NaHCO3 treatment
Submitter: PLEXdb Curator
Head of Lab: Yanming Zhu and Dianjing Guo
Experiment Factors: time
GeneChip Type: Soybean
Experiment design (14 hybridizations)
time
•0(control) hrs •0.5 hrs •1 hrs •3 hrs •6 hrs •12 hrs •24 hrs

23/42 Experiment GM27 Gene expression in Phytophthora sojae mycelia, germinating zoospores, and during infection of soybean hypocotyls
Submitter: PLEXdb Curator
Head of Lab: Mark Gijzen
Experiment Factors: tissue type name
GeneChip Type: Soybean
Experiment design (28 hybridizations)
tissue type name
•Germinating zoospores 0h •Germinating zoospores 2h •Germinating zoospores 6h •Mycelia H&Smedia •Mycelia V8media •Infected hypocotyls 6h •Infected hypocotyls 12h •Infected hypocotyls 24h •Infected hypocotyls 48h

24/42 Experiment GM26 Analysis of Iron Deficiency in Soybean Leaf Tissue
Submitter: PLEXdb Curator
Head of Lab: Randy Shoemaker
Experiment Factors: genotype, stress condition
GeneChip Type: Soybean
Experiment design (11 hybridizations)
genotype
•Clark •IsoClark
stress condition
•Iron Sufficient •Iron Defficient

25/42 Experiment GM25 GmMPK4 is a negative regulator of SA-mediated defense response
Submitter: Jianzhong Liu
Head of Lab: Steve Whitham
Experiment Factors: genotype
GeneChip Type: Soybean
Experiment design (8 hybridizations)
genotype
•Williams 82 •GmMPK4-silenced Williams 82

26/42 Experiment GM24 Transcriptional profiling of root-knot nematode induced feeding sites in cowpea (Vigna unguiculata L. Walp)
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, pathogen infection, time
GeneChip Type: Soybean
Experiment design (20 hybridizations)
genotype
•CB46(resistant) •null-Rk(susceptible)
pathogen infection
•nematode infected •uninfected
time
•3 dpi •9 dpi

27/42 Experiment GM23 Storage Protein Suppression in Transgenic Soybean Cotyledons
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genetic line
GeneChip Type: Soybean
Experiment design (6 hybridizations)
genetic line
•WT_non-transgenic •RNAi_transgenic

28/42 Experiment GM22 Suppression of oleosin in soybean cotyledon
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genetic line
GeneChip Type: Soybean
Experiment design (6 hybridizations)
genetic line
•wildtype •transgenic RNAiOleosin

29/42 Experiment GM21 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: tissue type name
GeneChip Type: Soybean
Experiment design (5 hybridizations)
tissue type name
•mature pollen •sporophytic tissue

30/42 Experiment GM20 Genome-wide analysis of gene expression in the soybean shoot apical meristem
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: tissue type name
GeneChip Type: Soybean
Experiment design (6 hybridizations)
tissue type name
•non-apical meristem •shoot apical meristem •axillary meristem

31/42 Experiment GM19 Detection and Validation of Single Feature Polymorphisms in Cowpea using a Soybean Genome Array
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, stress condition
GeneChip Type: Soybean
Experiment design (8 hybridizations)
genotype
•CB46 •503-1
stress condition
•drought stressed •unstressed

32/42 Experiment GM18 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: photoperiod
GeneChip Type: Soybean
Experiment design (10 hybridizations)
photoperiod
•0SD •1SD •2SD •4SD •6SD

33/42 Experiment GM17 Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: treatment
GeneChip Type: Soybean
Experiment design (6 hybridizations)
treatment
•LCO •Water(control)

34/42 Experiment GM16 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: cultivar
GeneChip Type: Soybean
Experiment design (25 hybridizations)
cultivar
•2601R •Bayfield •Mandarin •PS46R •S03W4

35/42 Experiment GM15 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: pathogen isolates, time
GeneChip Type: Soybean
Experiment design (27 hybridizations)
pathogen isolates
•HW94-1(resistant) •TW72-1(susceptible) •mock
time
•0 hai •6 hai •12 hai •24 hai •48 hai

36/42 Experiment GM14 Expression data from SRB embryo regions at the globular stage
Submitter: PLEXdb Curator
Head of Lab: Bob Goldberg
Experiment Factors: tissue type name
GeneChip Type: Soybean
Experiment design (4 hybridizations)
tissue type name
•embryo proper •suspensor

37/42 Experiment GM13 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: cultivar, time, treatment
GeneChip Type: Soybean
Experiment design (128 hybridizations)
cultivar
•ATHOW •CONRAD •GENERAL •WILLIAMS •OX20-8 •V716370 •P1291327 •SLOAN
time
•3 dpi •5 dpi
treatment
•mock •inoculated

38/42 Experiment GM12 Gene expression analysis in soybean with respect to Phakopsora pachyrhizi at V2 growth stage
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: pathogen infection
GeneChip Type: Soybean
Experiment design (6 hybridizations)
pathogen infection
•control •rust inoculated

39/42 Experiment GM11 Soy LGI Protein NILs, seed fill
Submitter: Yung-Tsi Bolon
Head of Lab: Carroll Vance
Experiment Factors: genotype, time
GeneChip Type: Soybean
Experiment design (24 hybridizations)
genotype
•LoProt •HiProt
time
•25-50 •>50-100 •>100-200 •>200-300

40/42 Experiment GM10 Genomics of Soybean Seed Development Using Laser Capture Microdissection (Submitted by Julie Dickerson, PLEXdb Team)
Submitter: Julie A Dickerson
Head of Lab: Bob Goldberg
Experiment Factors: developmental stage name, tissue type name
GeneChip Type: Soybean
Experiment design (69 hybridizations)
developmental stage name
•Globular Stage Embryo •Heart-Stage Embryo •Cotyledon-stage Embryo
tissue type name
•Whole Seed •Young Trifolate Leaf •Embryo proper (LCM) •Endosperm (LCM) •Endothelium (LCM) •Epidermis (LCM) •Hilum (LCM) •Inner integument (LCM) •Outer integument (LCM) •Suspensor (LCM)

41/42 Experiment GM3 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
Submitter: Sucheta Tripathy
Head of Lab: Bruno Sobral
Experiment Factors: genotype, infection site, time, treated or untreated
GeneChip Type: Soybean
Experiment design (160 hybridizations)
genotype
•V71-370 •CONRAD •SLOAN •VP-RIL9
treated or untreated
•P.sojae inoculated •mock inoculated
infection site
•above and below infection •above infection •below infection
time
•24 hai •48 hai •72 hai •120 hai

42/42 Experiment GM2 Comprehensive molecular characterization of the soybean rust disease [Embrapa-Soja - Iowa State Univ; 2005]
Submitter: Martijn van de Mortel
Head of Lab: Baum / Whitham
Experiment Factors: genotype, time, Treated or untreated
GeneChip Type: Soybean
Experiment design (120 hybridizations)
genotype
•PI230970 •Embrapa48
time
•006 •012 •018 •024 •036 •048 •072 •096 •120 •168
Treated or untreated
•SBR •Mock

 
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