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Experiment Search Results
Wheat
1/35 Experiment TA46 Lr1-mediated leaf rust resistance pathways of transgenic wheat lines
Submitter: PLEXdb Curator
Head of Lab: Sylvie Cloutier
Experiment Factors: time
GeneChip Type: Wheat
Experiment design (18 hybridizations)
time
•0 hrs •6 hrs •24 hrs

2/35 Experiment TA45 Global transgenerational gene expression dynamics in two nascent allohexaploid wheat lines analogous in genome constitution to common wheat (Triticum aestivum)
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genetic line
GeneChip Type: Wheat
Experiment design (18 hybridizations)
genetic line
•AT5 selfed generation 4 •AT5 selfed generation 5 •AT9 selfed generation 4 •AT9 selfed generation 5 •MPV5 •MPV9 •Parental TQ27 •Parental TTH01 •Parental TTR04

3/35 Experiment TA44 Transcriptome profiling of reproductive stage flag leaves of wheat from drought susceptible parent WL711, drought tolerant parent C306 and drought susceptible and drought tolerant RIL bulks in irrigated and drought condition
Submitter: PLEXdb Curator
Head of Lab: NK Singh
Experiment Factors: cultivar, stress condition
GeneChip Type: Wheat
Experiment design (24 hybridizations)
cultivar
•WL711 susceptible •RIL susceptible •C306 tolerant •RIL tolerant
stress condition
•irrigated •drought

4/35 Experiment TA43 Expression data from Triticum aestivum L. roots
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, treatment
GeneChip Type: Wheat
Experiment design (4 hybridizations)
genotype
•Luohan •Chinese Spring
treatment
•control •PEG

5/35 Experiment TA42 Transcriptome profiling and expression analyses of genes critical to wheat adaptation to low temperature
Submitter: PLEXdb Curator
Head of Lab: Debbie Laudencia-Chingcuanco
Experiment Factors: genotype, time
GeneChip Type: Wheat
Experiment design (96 hybridizations)
genotype
•Winter Manitou (12W) •Spring Northstar (8S) •Spring Manitou (Ma) •Winter Northstar (No)
time
•0 days •2 days •14 days •21 days •35 days •42 days •56 days •70 days

6/35 Experiment TA41 Response to Fusarium in near-isogenic lines harboring resistance QTLs Fhb1 and Qfhs.ifa-5A
Submitter: Wolfgang Schweiger
Head of Lab: Hermann Buerstmayr
Experiment Factors: genotype, time, treatment
GeneChip Type: Wheat
Experiment design (90 hybridizations)
genotype
•NIL1 (resistant, Fhb1, Qfhs.ifa-5A) •NIL2 (moderately resistant, Fhb1) •NIL3 (moderately resistant, Qfhs.ifa-5A) •NIL4 (susceptible) •CM82036 (resistant)
treatment
•Fusarium graminearum strain IFA-65 •water
time
•8 hai •24 hai •72 hai

7/35 Experiment TA40 Differential transcriptome analyses of three wheat genotypes in their response to Fusarium Head Blight and trichothecenes
Submitter: PLEXdb Curator
Head of Lab: Brian Ellis
Experiment Factors: genotype, pathogen inoculation, time
GeneChip Type: Wheat
Experiment design (144 hybridizations)
genotype
•Superb •GS-1-EM0040 •GS-1-EM0168
pathogen inoculation
•uninoculated control •water •FgTri5+ •FgTri5- •FgTri5-/DON •DON
time
•0 hrs •3 hrs •8 hrs •24 hrs

8/35 Experiment TA39 Expression data in wheat (T. aestivum L.) near isogenic lines in response to powdery mildew infection
Submitter: PLEXdb Curator
Head of Lab: Qixin Sun
Experiment Factors: genotype, time
GeneChip Type: Wheat
Experiment design (12 hybridizations)
genotype
•susceptible(8866) •resistant(pm30)
time
•0 hrs •12 hrs

9/35 Experiment TA38 affy_seed_kinetic_wheat-Transcriptomic wheat seed
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: time
GeneChip Type: Wheat
Experiment design (10 hybridizations)
time
•B-100 degree days •C-200 degree days •D-250 degree days •E-300-degree days •G-500 degree days

10/35 Experiment TA37 Metabolism-based resistance to herbicides in black-grass
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype
GeneChip Type: Wheat
Experiment design (6 hybridizations)
genotype
•Sensitive •Moderately resistant •Resistant

11/35 Experiment TA36 Pleiotropic expression of endogenous genes upon fungus infection of wheat plants containing anti-fungal transgenes
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, pathogen isolates
GeneChip Type: Wheat
Experiment design (18 hybridizations)
genotype
•Gro •GrKP4
pathogen isolates
•T. caries (T1) •T. caries (T16) •Control

12/35 Experiment TA35 RNA profiling of Fusarium head blight-resistant wheat addition lines containing the Thinopyrum elongatum chromosome 7E
Submitter: PLEXdb Curator
Head of Lab: Therese Ouellet
Experiment Factors: genotype, pathogen inoculation, time
GeneChip Type: Wheat
Experiment design (18 hybridizations)
genotype
•CS •CS-7E •CS-7EL
pathogen inoculation
•FG •Control
time
•2 dpi •4 dpi

13/35 Experiment TA34 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: compound, pathogen inoculation
GeneChip Type: Wheat
Experiment design (12 hybridizations)
compound
•No_Si •Si
pathogen inoculation
•No_Bgt •Bgt

14/35 Experiment TA33 Wild emmer wheat comparison of drought resistant vs. susceptible genotypes under terminal drought
Submitter: Tamar Krugman
Head of Lab: Fahima Tzion
Experiment Factors: genotype, treated or untreated
GeneChip Type: Wheat
Experiment design (12 hybridizations)
genotype
•Drought resistant (R) Y12-3 •Drought susceptible (S) A24-39
treated or untreated
•Well-watered •terminal drought

15/35 Experiment TA32 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, inoculation, time
GeneChip Type: Wheat
Experiment design (36 hybridizations)
genotype
•Tc •Tc-Lr1 •Tc-Lr34
time
•3 dpi •7 dpi
inoculation
•mock •P. triticina

16/35 Experiment TA31 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: pathogen infection
GeneChip Type: Wheat
Experiment design (6 hybridizations)
pathogen infection
•mock inoculated •Fp inoculated

17/35 Experiment TA30 Genotypic differences in water soluble carbohydrate metabolism in stem
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype
GeneChip Type: Wheat
Experiment design (16 hybridizations)
genotype
•SB165 •SB169 •SB10 •SB62 •SB109 •SB69 •SB57 •SB3

18/35 Experiment TA29 Expression data from rust or mock inoculated, fully expanded flag leaf halves
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype, organism part name, treatment
GeneChip Type: Wheat
Experiment design (36 hybridizations)
genotype
•Jupateco_Lr34 (resistant) •Jupateco_Lr34(susceptible) •Thatcher_Lr34(resistant) •Thatcher_L34(susceptible)
organism part name
•basal leaf •distal leaf
treatment
•mock_inoculated •rust_inoculated

19/35 Experiment TA28 Wheat expression level polymorphism study parentals and progenies from SB location
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: genotype
GeneChip Type: Wheat
Experiment design (76 hybridizations)
genotype
•AC Domain •RL4452 •G13 •F29 •H10 •G32 •H5 •DH91 •F36 •A91 •E5 •D15 •G30 •B68 •C31 •DH95 •A81 •A40 •A88 •A35 •A10 •C25 •F38b •F38a •D39 •B33 •J15 •F82 •C22 •F48 •F44 •H8 •B11 •H23 •B65 •C10 •A77 •H9

20/35 Experiment TA27 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
Submitter: PLEXdb Curator
Head of Lab: --
Experiment Factors: developmental stage name
GeneChip Type: Wheat
Experiment design (21 hybridizations)
developmental stage name
•pre-meiosis •leptotene-pachytene •diplotene-anaphaseI •telophaseI-telophaseII •tetrads •immature pollen •mature anthers

21/35 Experiment TA25 Transcription profiling of wheat interacting with incompatible and compatible yellow rust in a Yr1-containing genotype
Submitter: Graham Robert David McGrann
Head of Lab: Mahinur Akkaya
Experiment Factors: pathogen isolates
GeneChip Type: Wheat
Experiment design (9 hybridizations)
pathogen isolates
•Mock inoculated (Control) •Yr1-avirulent wheat yellow rust isolate 232E137 •Yr1-virulent wheat yellow rust isolate 169E136

22/35 Experiment TA24 Transcription profiling wheat responses to adapted and non-adapted isolates of the blast fungus, Magnaporthe
Submitter: Graham Robert David McGrann
Head of Lab: Lesley Boyd
Experiment Factors: pathogen isolates
GeneChip Type: Wheat
Experiment design (12 hybridizations)
pathogen isolates
•Mock-inoculated (Control) •Wheat non-adapted Magnaporthe isolate BR29 •Wheat adapted Magnaporthe isolate BR32 •Wheat adapted Magnaporthe isolate BR37

23/35 Experiment TA23 Drought stress in Wheat at grain filling stage
Submitter: alessio aprile
Head of Lab: Luigi Cattivelli
Experiment Factors: genotype, stress condition
GeneChip Type: Wheat
Experiment design (27 hybridizations)
genotype
•Creso •CS •CS-5AL
stress condition
•Control •Mild stress •Severe stress

24/35 Experiment TA22 Freeze Resistance basis of winter wheat mutant lines
Submitter: Fedora Sutton
Head of Lab: Fedora Sutton
Experiment Factors: genotype, temperature
GeneChip Type: Wheat
Experiment design (8 hybridizations)
genotype
•SD16029 (FR) •SD16169 (FS)
temperature
•25 C •4 C

25/35 Experiment TA20 Transcriptome analysis of a wheat NIL pair carrying FHB resistant and susceptible alleles
Submitter: Haiyan Jia
Head of Lab: Gary Muehlbauer
Experiment Factors: genotype, time, treated or untreated
GeneChip Type: Wheat
Experiment design (24 hybridizations)
genotype
•resistant •susceptible
treated or untreated
•Fusarium graminearum strain Butte 86 •water
time
•48 hai •96 hai

26/35 Experiment TA11 Wheat Yr39 and yr39 (Alpowa) genotypes treated with P.s. tritici PST-78
Submitter: Tristan E Coram
Head of Lab: Xianming Chen
Experiment Factors: genotype, time, Treated or untreated
GeneChip Type: Wheat
Experiment design (36 hybridizations)
genotype
•Yr39 •yr39
time
•12 hpi •24 hpi •48 hpi
Treated or untreated
•P. s. tritici-inoculated •Mock-inoculated

27/35 Experiment TA10 Mapping translocation breakpoints using a wheat microarray
Submitter: Prasanna R Bhat
Head of Lab: Timothy J. Close
Experiment Factors: genetic line
GeneChip Type: Wheat
Experiment design (10 hybridizations)
genetic line
•Pavon •Pavon Dt1BL •1RS.1BL •T-1 •1B+5

28/35 Experiment TA9 Wheat Yr5 isolines treated with P.s. tritici PST-100 (06-194)
Submitter: Tristan E Coram
Head of Lab: Xianming Chen
Experiment Factors: genotype, time, Treated or untreated
GeneChip Type: Wheat
Experiment design (48 hybridizations)
genotype
•Yr5 isoline •yr5 isoline
time
•06h •12h •24h •48h
Treated or untreated
•P. s. tritici-inoculated •Mock-inoculated

29/35 Experiment TA8 Expression Profile Mapping - Location 2 - mapping population
Submitter: Mark C Jordan
Experiment Factors: genotype
GeneChip Type: Wheat
Experiment design (72 hybridizations)
genotype
•G13 •F29 •H10 •G32 •H5 •DH91 •F36 •A91 •E5 •D15 •G30 •B68 •C31 •DH95 •A81 •A40 •A88 •A35 •A10 •C25 •F38b •F38a •D39 •B33 •J15 •F82 •C22 •F48 •F44 •H8 •B11 •H23 •B65 •C10 •A77 •H9

30/35 Experiment TA7 Expression Profile Mapping - Location 2 - parental genotypes
Submitter: Mark C Jordan
Experiment Factors: genotype
GeneChip Type: Wheat
Experiment design (4 hybridizations)
genotype
•RL4452 •AC Domain

31/35 Experiment TA6 Expression Profile Mapping - 78 chip experiment parents
Submitter: Mark C Jordan
Experiment Factors: genotype
GeneChip Type: Wheat
Experiment design (4 hybridizations)
genotype
•RL4452 •AC Domain

32/35 Experiment TA5 Expression Profile Mapping - 78 chip experiment final
Submitter: Mark C Jordan
Experiment Factors: genotype
GeneChip Type: Wheat
Experiment design (78 hybridizations)
genotype
•A88 •F36 •B11 •DH91 •C58 •D15 •F29 •H23 •H5 •A81 •F48 •B65 •B33 •H8 •F44 •F38b •A91 •F82 •C10 •G13 •H10 •F87 •A35 •G30 •E5 •DH95 •C31 •A40 •C22 •B68 •H9 •G32 •F38a •C25 •J15 •A77 •D39 •A10 •B10

33/35 Experiment TA3 Transcription patterns during wheat development (Mirrors BB3)
Submitter: Tim Sutton
Head of Lab: Peter Langridge
Experiment Factors: tissue type
GeneChip Type: Wheat
Experiment design (39 hybridizations)
tissue type
•germinating seed, coleoptile •germinating seed, root •germinating seed, embryo •seedling, root •seedling, crown •seedling, leaf •immature inflorescence •floral bracts, before anthesis •pistil, before anthesis •anthers, before anthesis •3-5 DAP caryopsis •22 DAP embryo •22 DAP endosperm

34/35 Experiment TA2 Wheat GeneChip Test
Submitter: Timothy J Close
Head of Lab: Timothy J. Close
Experiment Factors: dose
GeneChip Type: Wheat
Experiment design (6 hybridizations)
dose
•LowSpike •HighSpike

35/35 Experiment TA1 Rehybridization of Wheat and Barley cRNAs to the Affymetrix Wheat Genome Arrays
Submitter: Rico A. Caldo
Head of Lab: Roger P Wise
Experiment Factors: genotype
GeneChip Type: Wheat
Experiment design (2 hybridizations)
genotype
•Wheat (BB1-H1/S1) •Barley (Mla1-5874-0hai)

 
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